Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g13
         (113 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0900 + 7091970-7092068,7092175-7093131,7093210-7093968,709...    27   2.8  
04_04_0361 + 24701275-24701350,24702565-24703068,24703158-24703711     25   8.6  

>01_01_0900 +
           7091970-7092068,7092175-7093131,7093210-7093968,
           7094322-7094366
          Length = 619

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 9   LIITGYSIIGNHGTASRCVPQIHYNALLMNLI 104
           +I+ GY   G  G A RCV Q+  + +L N+I
Sbjct: 301 IIVGGYCREGRLGEALRCVRQMKDSGVLPNVI 332


>04_04_0361 + 24701275-24701350,24702565-24703068,24703158-24703711
          Length = 377

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 65  DTPACGPVITNYGIPSYY 12
           D PACGP+I +  I + Y
Sbjct: 170 DDPACGPLIDSVAIKTLY 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,215
Number of Sequences: 37544
Number of extensions: 26385
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 14,793,348
effective HSP length: 18
effective length of database: 14,117,556
effective search space used: 268233564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)