Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g13
         (113 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   1.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   1.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   1.8  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   5.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   5.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    18   9.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 54  SRCVPQIHYNALLMNLI 104
           SRC P+IH + + +  I
Sbjct: 478 SRCPPEIHKSCICVRFI 494


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 54  SRCVPQIHYNALLMNLI 104
           SRC P+IH + + +  I
Sbjct: 478 SRCPPEIHKSCICVRFI 494


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 93  LAKRCSEFAGHTGLRSRDYQLW 28
           L  + SEF     +R + Y++W
Sbjct: 95  LTWKSSEFDSINSIRVKSYEIW 116


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 42  DYQLWNTQLL 13
           DY++WN QL+
Sbjct: 182 DYRVWNHQLI 191


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 78  SEFAGHTGLRSRDYQLWNTQLL 13
           SE+ G   LR    +LW   +L
Sbjct: 53  SEYGGVKDLRITPNKLWKPDIL 74


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 78  SEFAGHTGLRSRDYQLWNTQLL 13
           SE+ G   LR    +LW   +L
Sbjct: 53  SEYGGVKDLRITPNKLWKPDIL 74


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 78  SEFAGHTGLRSRDYQLWNTQLL 13
           SE+ G   LR    +LW   +L
Sbjct: 53  SEYGGVKDLRITPNKLWKPDIL 74


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 78  SEFAGHTGLRSRDYQLWNTQLL 13
           SE+ G   LR    +LW   +L
Sbjct: 53  SEYGGVKDLRITPNKLWKPDIL 74


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 78  SEFAGHTGLRSRDYQLWNTQLL 13
           SE+ G   LR    +LW   +L
Sbjct: 53  SEYGGVKDLRITPNKLWKPDIL 74


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 78  SEFAGHTGLRSRDYQLWNTQLL 13
           SE+ G   LR    +LW   +L
Sbjct: 53  SEYGGVKDLRITPNKLWKPDIL 74


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 78  SEFAGHTGLRSRDYQLWNTQLL 13
           SE+ G   LR    +LW   +L
Sbjct: 121 SEYGGVKDLRITPNKLWKPDIL 142


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 78  SEFAGHTGLRSRDYQLWNTQLL 13
           SE+ G   LR    +LW   +L
Sbjct: 121 SEYGGVKDLRITPNKLWKPDIL 142


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 68  RDTPACGPVITNYGI 24
           +D   CGPV+   G+
Sbjct: 129 QDRLTCGPVMPQGGV 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,221
Number of Sequences: 438
Number of extensions: 385
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 18
effective length of database: 138,459
effective search space used:  2630721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)