Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g11
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    27   2.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   4.9  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   4.9  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 52  NIKNMSCLCITKCCKA 5
           N+K+   LC TKCCK+
Sbjct: 369 NLKDKYALCSTKCCKS 384


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 449 LFTIMSKPNV---LTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNT 288
           LF I++K N+          I   + K   + +Q   L E +QP   +PAQLT ++T
Sbjct: 61  LFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTRIPAQLTIYDT 117


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 135 LKKNDLFTWNCVYHDERLNRIQKLGFSA*ALGV 233
           L+   LFTW C  + E  N +      A +LG+
Sbjct: 523 LEVQHLFTWTCELYSENFNTVISSFIIANSLGI 555


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 392 ETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNTKISEIQSIL 261
           E N ++ S   Q + + ESF     L    T+++  +S +QSIL
Sbjct: 371 ENNIQISSEYLQQHLIGESFDGNISLEPNSTEWDDDVSALQSIL 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,609
Number of Sequences: 5004
Number of extensions: 32847
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)