Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g10
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   3.7  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    24   4.8  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    24   6.4  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   6.4  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    23   8.5  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    23   8.5  

>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 213 IYTSSEQISSARWKIFPLSYISPNW*PS 296
           IYTSSE+  SA  +IF ++++     PS
Sbjct: 529 IYTSSERRVSASAEIFAMAFLEQETIPS 556


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 169 KMPKSRLRHFQDKLAYIQVPSKYH 240
           K  KS   HF+D   Y ++PS+Y+
Sbjct: 382 KWSKSHEYHFKDLENYFKLPSEYN 405


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 229 SKYHPLGGRSSLCRISLQTGDLASILII 312
           S+YH   G S L  ISL  G + ++ ++
Sbjct: 313 SQYHFTSGLSGLTYISLSIGQVFAVFVL 340


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 42  HFYVEPPPADTLESC 86
           H+YV PP   T + C
Sbjct: 213 HYYVNPPGVSTTDGC 227


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 221 KFRANIIRSVEDLPF 265
           KF  N+ RS++D+PF
Sbjct: 202 KFVENLARSIQDVPF 216


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 169 KMPKSRLRHFQDKLAYIQVPSKYHP 243
           ++   +L HF D L   ++PS Y P
Sbjct: 292 RIETDQLSHFPDHLDPSRIPSPYQP 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,345
Number of Sequences: 5004
Number of extensions: 24593
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)