Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15g10
(317 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0618 + 4577417-4577430,4577838-4577874,4578070-4578173,457... 27 2.4
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 27 4.2
04_04_0151 + 23134467-23134627,23134657-23134803,23135413-231355... 27 4.2
07_01_0099 + 741931-743835 26 7.4
06_01_0486 - 3455030-3455770 26 7.4
05_01_0186 - 1337657-1337977,1339142-1339203,1339297-1339346,133... 26 7.4
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830... 26 7.4
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443... 26 7.4
11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788 25 9.7
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 25 9.7
08_01_0880 + 8639813-8640190 25 9.7
08_01_0261 + 2131189-2131737 25 9.7
06_03_0655 + 23176075-23176470,23176573-23176710,23177506-231775... 25 9.7
04_04_1506 + 34051227-34051310,34051475-34051903,34052734-34053357 25 9.7
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 25 9.7
>07_01_0618 +
4577417-4577430,4577838-4577874,4578070-4578173,
4578512-4578707,4579559-4579628,4579849-4579952,
4580296-4580335,4581016-4581070,4581418-4581426,
4582026-4582157,4582544-4582613,4583029-4583086,
4583173-4583228,4583315-4583470,4583589-4583700,
4583782-4583923,4584141-4584216,4584306-4584401,
4584509-4584637
Length = 551
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 133 YDGSHHRTQDI*KMPKSRLRHFQDKLAYIQVPSKY 237
Y+GSHH + ++ ++ +R + K YI+ ++Y
Sbjct: 191 YEGSHHLSVELKRINSISIRFARSKRQYIEAQAEY 225
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 165 NILRSVMATIIHVASQDAQLRAFSCGH 85
N+ ++++ I+V+S D L + CGH
Sbjct: 1062 NVYMALISAAINVSSVDENLNLYDCGH 1088
>04_04_0151 +
23134467-23134627,23134657-23134803,23135413-23135512,
23135554-23135638,23135767-23136419
Length = 381
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 118 GRAAAGVLVRSQLSRVSAGGG 56
G A GV+VR+ R++AGGG
Sbjct: 77 GEAVNGVIVRADQPRLAAGGG 97
>07_01_0099 + 741931-743835
Length = 634
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 95 ENARSCASCEATCMMVA-ITERKIFERCLN 181
+N R+CA C A +++ IT RKI R N
Sbjct: 589 KNLRACADCHAVLKLISKITGRKIVFRDRN 618
>06_01_0486 - 3455030-3455770
Length = 246
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 42 HFYVEPPPADTLESCDRTRTPAAARP 119
H + +PPP+ SC TP RP
Sbjct: 61 HHHHKPPPSPRCPSCHPPYTPPTPRP 86
>05_01_0186 -
1337657-1337977,1339142-1339203,1339297-1339346,
1339447-1339544,1340622-1341002,1341123-1341128,
1341380-1341886,1342039-1342113,1342209-1342397
Length = 562
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 99 FSCGHNSLECLRVVVQHKSVSLNSLR 22
F HN+L C +VV++ K+ L +R
Sbjct: 137 FIVAHNALRCAKVVLEGKAPKLYEMR 162
>03_05_0042 + 20180151-20180468,20181595-20181665,20182929-20183087,
20183598-20183664,20183913-20184008,20184687-20184733,
20185113-20185193,20185704-20185806,20185967-20186028,
20187188-20187302,20193191-20195087,20195206-20195492
Length = 1100
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 250 HRADDICSELVYMQAYLENV-VSEI*ASFKYLAFCDGYHHTCSFTGRAAAGVLVRSQL 80
H D++ S +V + E + V + F L G TC+ TG+ G +V ++
Sbjct: 911 HETDNVRSNIVLRKESFEVLAVDTVQPGFNLLDTPTGETQTCAVTGQIDKGYMVEKEI 968
>01_07_0257 -
42343493-42343528,42344215-42344271,42344272-42344316,
42344374-42344518,42344606-42344733,42344939-42345044,
42345113-42345189,42345264-42345361,42345945-42346058,
42346154-42346294,42346418-42346502,42346721-42346849
Length = 386
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 18 KHASYLMKHFYVEPPPADTLE--SCDRTRTPAAA 113
KHA ++ H + PPP LE + +R P A+
Sbjct: 294 KHAGHVASHLRILPPPNKVLENDNAAASRPPTAS 327
>11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788
Length = 1130
Score = 25.4 bits (53), Expect = 9.7
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -3
Query: 234 FARNLYI--CKLILKMS*ARFRHLSNILRSVMATIIHVASQDAQLRAFSCGHNSLECLRV 61
F LYI C LK+ H N ++S+ +H+ S + F G L LR+
Sbjct: 978 FVEKLYIEKCHSSLKL------HNGNAMKSLHT--LHIDSVATHMDPFLLG---LRALRI 1026
Query: 60 VVQHKSVSLNSLRVLI 13
++ S LNSL VL+
Sbjct: 1027 LIIKDSEELNSLDVLL 1042
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 42 HFYVEPPPADTLESCDRTR 98
HFY P +DT SC R R
Sbjct: 29 HFYYGPHVSDTTASCTRVR 47
>08_01_0880 + 8639813-8640190
Length = 125
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 131 CMMVAITERKIFERCLNLAYDIFKISL 211
C M + + I+E C +L+Y+I SL
Sbjct: 27 CHMAFVCDGHIYEHCRHLSYNILTSSL 53
>08_01_0261 + 2131189-2131737
Length = 182
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 130 CSFTGRAAAGVLVRSQLSRVSAGGGS 53
C F G AAG+ + ++ +A GGS
Sbjct: 96 CGFPGHCAAGMKIAVKVEAATATGGS 121
>06_03_0655 +
23176075-23176470,23176573-23176710,23177506-23177574,
23177652-23177723,23177973-23178055,23178135-23178266,
23178407-23178617,23179233-23179262
Length = 376
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 24 ASYLMKHFYVEPPPADTLESCDRTRTPAAA 113
A+ L+ + PPPA + R R PAAA
Sbjct: 3 ATSLLSRLLILPPPAPAAAASLRQRKPAAA 32
>04_04_1506 + 34051227-34051310,34051475-34051903,34052734-34053357
Length = 378
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 96 SCGHNSLECLRVVVQHKSVSLNS 28
SCGHN+L +V+H + L S
Sbjct: 65 SCGHNTLIVADAIVEHMTRKLRS 87
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 214 YIQVPSKYHPLGGRSSL 264
Y +P KYHP+ GR+ L
Sbjct: 82 YHLIPHKYHPMRGRNHL 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,929,779
Number of Sequences: 37544
Number of extensions: 168970
Number of successful extensions: 446
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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