Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g10
         (317 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding pr...    27   9.1  
BC110916-1|AAI10917.1| 1102|Homo sapiens JARID1A protein protein.      27   9.1  
BC053893-1|AAH53893.1| 1102|Homo sapiens JARID1A protein protein.      27   9.1  
BC048307-1|AAH48307.1| 1102|Homo sapiens JARID1A protein protein.      27   9.1  
AL353639-4|CAI41239.1| 2070|Homo sapiens multiple PDZ domain pro...    27   9.1  
AL353639-3|CAI41238.1| 2042|Homo sapiens multiple PDZ domain pro...    27   9.1  
AL162386-2|CAH71899.1| 2070|Homo sapiens multiple PDZ domain pro...    27   9.1  
AL162386-1|CAH71900.1| 2042|Homo sapiens multiple PDZ domain pro...    27   9.1  
AL161449-5|CAI40493.1| 2070|Homo sapiens multiple PDZ domain pro...    27   9.1  
AL161449-4|CAI40492.1| 2042|Homo sapiens multiple PDZ domain pro...    27   9.1  
AF093419-1|AAC61870.1| 2042|Homo sapiens multi PDZ domain protei...    27   9.1  
AB210041-1|BAE06123.1| 2045|Homo sapiens MPDZ variant protein pr...    27   9.1  
AB209999-1|BAE06081.1| 1731|Homo sapiens JARID1A variant protein...    27   9.1  

>S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding
           protein 2 protein.
          Length = 1722

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 80  EL*PHENARSCASCEATCMMVAITERKIFERCLNLAYDIFKISLHIYKFRANIIRSVEDL 259
           EL P ++ R C++C  TC + A+T     ER + L +        + K        +EDL
Sbjct: 667 ELVP-DDERQCSACRTTCFLSALTCSCNPERLVCLYHPTDLCPCPMQKKCLRYRYPLEDL 725

Query: 260 PFVVY 274
           P ++Y
Sbjct: 726 PSLLY 730


>BC110916-1|AAI10917.1| 1102|Homo sapiens JARID1A protein protein.
          Length = 1102

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 80  EL*PHENARSCASCEATCMMVAITERKIFERCLNLAYDIFKISLHIYKFRANIIRSVEDL 259
           EL P ++ R C++C  TC + A+T     ER + L +        + K        +EDL
Sbjct: 667 ELVP-DDERQCSACRTTCFLSALTCSCNPERLVCLYHPTDLCPCPMQKKCLRYRYPLEDL 725

Query: 260 PFVVY 274
           P ++Y
Sbjct: 726 PSLLY 730


>BC053893-1|AAH53893.1| 1102|Homo sapiens JARID1A protein protein.
          Length = 1102

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 80  EL*PHENARSCASCEATCMMVAITERKIFERCLNLAYDIFKISLHIYKFRANIIRSVEDL 259
           EL P ++ R C++C  TC + A+T     ER + L +        + K        +EDL
Sbjct: 667 ELVP-DDERQCSACRTTCFLSALTCSCNPERLVCLYHPTDLCPCPMQKKCLRYRYPLEDL 725

Query: 260 PFVVY 274
           P ++Y
Sbjct: 726 PSLLY 730


>BC048307-1|AAH48307.1| 1102|Homo sapiens JARID1A protein protein.
          Length = 1102

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 80  EL*PHENARSCASCEATCMMVAITERKIFERCLNLAYDIFKISLHIYKFRANIIRSVEDL 259
           EL P ++ R C++C  TC + A+T     ER + L +        + K        +EDL
Sbjct: 667 ELVP-DDERQCSACRTTCFLSALTCSCNPERLVCLYHPTDLCPCPMQKKCLRYRYPLEDL 725

Query: 260 PFVVY 274
           P ++Y
Sbjct: 726 PSLLY 730


>AL353639-4|CAI41239.1| 2070|Homo sapiens multiple PDZ domain protein
            protein.
          Length = 2070

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 104  RSCASCEATCMMVAITERKIFERCLNLA 187
            +S  +C A C+M+    ++ FER +N+A
Sbjct: 985  QSSLACNAECVMLQNVSKESFERTINIA 1012


>AL353639-3|CAI41238.1| 2042|Homo sapiens multiple PDZ domain protein
            protein.
          Length = 2042

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 104  RSCASCEATCMMVAITERKIFERCLNLA 187
            +S  +C A C+M+    ++ FER +N+A
Sbjct: 985  QSSLACNAECVMLQNVSKESFERTINIA 1012


>AL162386-2|CAH71899.1| 2070|Homo sapiens multiple PDZ domain protein
            protein.
          Length = 2070

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 104  RSCASCEATCMMVAITERKIFERCLNLA 187
            +S  +C A C+M+    ++ FER +N+A
Sbjct: 985  QSSLACNAECVMLQNVSKESFERTINIA 1012


>AL162386-1|CAH71900.1| 2042|Homo sapiens multiple PDZ domain protein
            protein.
          Length = 2042

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 104  RSCASCEATCMMVAITERKIFERCLNLA 187
            +S  +C A C+M+    ++ FER +N+A
Sbjct: 985  QSSLACNAECVMLQNVSKESFERTINIA 1012


>AL161449-5|CAI40493.1| 2070|Homo sapiens multiple PDZ domain protein
            protein.
          Length = 2070

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 104  RSCASCEATCMMVAITERKIFERCLNLA 187
            +S  +C A C+M+    ++ FER +N+A
Sbjct: 985  QSSLACNAECVMLQNVSKESFERTINIA 1012


>AL161449-4|CAI40492.1| 2042|Homo sapiens multiple PDZ domain protein
            protein.
          Length = 2042

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 104  RSCASCEATCMMVAITERKIFERCLNLA 187
            +S  +C A C+M+    ++ FER +N+A
Sbjct: 985  QSSLACNAECVMLQNVSKESFERTINIA 1012


>AF093419-1|AAC61870.1| 2042|Homo sapiens multi PDZ domain protein
            MUPP1 protein.
          Length = 2042

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 104  RSCASCEATCMMVAITERKIFERCLNLA 187
            +S  +C A C+M+    ++ FER +N+A
Sbjct: 985  QSSLACNAECVMLQNVSKESFERTINIA 1012


>AB210041-1|BAE06123.1| 2045|Homo sapiens MPDZ variant protein
            protein.
          Length = 2045

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 104  RSCASCEATCMMVAITERKIFERCLNLA 187
            +S  +C A C+M+    ++ FER +N+A
Sbjct: 989  QSSLACNAECVMLQNVSKESFERTINIA 1016


>AB209999-1|BAE06081.1| 1731|Homo sapiens JARID1A variant protein
           protein.
          Length = 1731

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 80  EL*PHENARSCASCEATCMMVAITERKIFERCLNLAYDIFKISLHIYKFRANIIRSVEDL 259
           EL P ++ R C++C  TC + A+T     ER + L +        + K        +EDL
Sbjct: 708 ELVP-DDERQCSACRTTCFLSALTCSCNPERLVCLYHPTDLCPCPMQKKCLRYRYPLEDL 766

Query: 260 PFVVY 274
           P ++Y
Sbjct: 767 PSLLY 771


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,702,647
Number of Sequences: 237096
Number of extensions: 836428
Number of successful extensions: 1675
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1675
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)