Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g10
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.17 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   4.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   4.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   6.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   6.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   8.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.17
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 57   PPPADTLESCDRTRTPAAARPVKLHV*W*PSQN 155
            P P     +CDR +     R ++ H  W P ++
Sbjct: 1655 PVPGSNYNTCDRIKRGTVIRSIRSHSTWDPRRH 1687


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 238 HPLGGRSSLCRISLQTGDLAS 300
           HPL G   LC I    GD AS
Sbjct: 101 HPLSGSKHLCSI---CGDRAS 118


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 238 HPLGGRSSLCRISLQTGDLAS 300
           HPL G   LC I    GD AS
Sbjct: 101 HPLSGSKHLCSI---CGDRAS 118


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 87  HNSLECLRVVVQHKSVSLNSLRV 19
           H S  C+R + +H  +  +S +V
Sbjct: 485 HKSCICVRFIAEHTKMLEDSTKV 507


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 87  HNSLECLRVVVQHKSVSLNSLRV 19
           H S  C+R + +H  +  +S +V
Sbjct: 485 HKSCICVRFIAEHTKMLEDSTKV 507


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 133 TCSFTGRAAAGVLVRSQ 83
           TC FT    A +LVR++
Sbjct: 189 TCDFTRDKVAPILVRAR 205


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 255 SSTERMIFARNLYICKL 205
           SSTERMI A   +I  L
Sbjct: 270 SSTERMIIANLNFILHL 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,608
Number of Sequences: 438
Number of extensions: 1818
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)