Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g07
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    30   0.27 
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    29   0.48 
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    27   1.9  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    26   4.5  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    26   4.5  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   4.5  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   4.5  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   5.9  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   7.8  

>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = -2

Query: 299 SNLITTMENTKFGGVGTSLNDITSMAEGELAAKLTSFMFG 180
           SNL+      KF     +L++++++ EG++++KL+S + G
Sbjct: 38  SNLLKLQSFAKFESTVDALDNVSALVEGKVSSKLSSLLEG 77


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = -2

Query: 476 YKEGRWVANTDSSQCIDFSNYKELAIDDDVEF---WIPTIGN-TTYHDSWKDASGWS-FI 312
           +++  WV    +   +DF  YK+  +    EF    IP +GN   Y+  W +    +  I
Sbjct: 261 FRQQGWVVKNGTKFSVDFLLYKKGPVFSHAEFAILLIPCVGNKQKYNMQWHEVHCLNRVI 320

Query: 311 AQQKSNLI 288
           AQ K +LI
Sbjct: 321 AQVKKSLI 328


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 416 YKELAIDDDVEFWIPTIGNTTYHDSWKDASGWS 318
           Y +  + D + + IPT+     H+ WK+ + WS
Sbjct: 172 YADSVLWDVLHYRIPTLDGYQQHNLWKNFTRWS 204


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 201 FGGQFAFSHGSDVVQTGADAAKLGVLHGGYEIAFLLGNKRPTAGIFPTVVIGCVA 365
           +GG  A  +  D +++ A   + G++  G    +  GN RPT G       GCVA
Sbjct: 119 YGGVNALFNTIDWIESSAWDGRDGIVVAGDIALYAKGNARPTGG------AGCVA 167


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 368 IGNTTYHDSWKDASGWSFIAQQKSNLITTMENT 270
           +  + Y D+W D   WS I ++ +N +   E +
Sbjct: 241 LNRSRYIDTWFDCIDWSVIEERLTNSLANSEQS 273


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 506 HTSNCYNNSIYKEGRWVANTDSSQCIDF 423
           HT   Y+N+ ++EG +V   +S + + F
Sbjct: 438 HTHRKYSNNTWEEGEYVVVANSDETVKF 465


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 306  LGNKRPTAGIFPTVVIGCV 362
            L  +RP AGIF T +IG V
Sbjct: 1046 LSKERPQAGIFNTYIIGSV 1064


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 410 ELAIDDDVEFWIPTIGNTTYHDSWKDASGWSFIA 309
           ELA+   +     T G    H SW    GW+++A
Sbjct: 137 ELAVAFPINGSFHTYGTRFIHPSWGFTLGWNYLA 170


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 188 MFGHVATFVIVFIVILFLYCMVR 120
           MFGH+   ++    IL +Y MVR
Sbjct: 352 MFGHIIGVILCIQWILLMYLMVR 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,091
Number of Sequences: 5004
Number of extensions: 41178
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)