Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15g07
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0178 + 17594062-17595576 31 0.65
02_03_0288 - 17328805-17328828,17328888-17328989,17329069-173292... 29 2.6
05_03_0416 + 13684604-13688050 29 3.4
05_01_0257 + 1967471-1967695,1968571-1969395 29 3.4
01_07_0233 + 42191465-42191953,42191976-42192272,42192310-42192690 29 3.4
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622 29 3.4
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 4.6
05_06_0015 + 24953918-24954359,24955622-24955857,24955945-249560... 28 6.0
11_04_0228 + 15105752-15105921,15106774-15106919,15107369-151074... 27 8.0
06_03_1470 + 30371391-30372353 27 8.0
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344... 27 8.0
>06_03_0178 + 17594062-17595576
Length = 504
Score = 31.1 bits (67), Expect = 0.65
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 379 GFRPSATQPITTVGKMPAVGRLLPNKKAIS*PPW 278
G PSAT P T + P++G P+ + S PPW
Sbjct: 471 GTTPSATTPKTRFSRDPSLGSRSPSTRQGSTPPW 504
>02_03_0288 -
17328805-17328828,17328888-17328989,17329069-17329239,
17329471-17329572,17331257-17331387,17335329-17335460,
17335616-17335792,17335897-17336077
Length = 339
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 210 QFAFSHGSDVVQTGADAAKLGVLH--GGYEIAFLLGNKRPTAGIFP-TVVIGCVAD 368
++ HG+D + D L VLH G E+A L G ++ +FP T I CV D
Sbjct: 137 RYLLDHGADTEKLNNDG--LTVLHFASGEEVAALCGARKDVETLFPVTSRIPCVHD 190
>05_03_0416 + 13684604-13688050
Length = 1148
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 503 TSNCYNNSIYKEGRWVANTDSSQCIDFSNYKEL 405
T N YN I +WV + D+ +C+D EL
Sbjct: 619 TLNLYNTKITMLPQWVTSIDTLECLDLGYCHEL 651
>05_01_0257 + 1967471-1967695,1968571-1969395
Length = 349
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 500 SNCYNNSIYKEGRWVANTDSSQCIDFSNYKELAIDDDVEF 381
+N N ++K WV TD D + Y++ A DV+F
Sbjct: 280 NNLQNRVLFKSD-WVLRTDGDAAADLAEYRDNATKWDVDF 318
>01_07_0233 + 42191465-42191953,42191976-42192272,42192310-42192690
Length = 388
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Frame = -2
Query: 434 CIDFSNYKELAI----DDDVEFWIP 372
C+D NY EL I DDD EF++P
Sbjct: 356 CVDTENYSELEIALDTDDDEEFFLP 380
>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
Length = 288
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 437 ATSPCWPPNALLCKCCCCS 493
A SP W P C+ CCC+
Sbjct: 231 ACSPAWTPRRPRCRRCCCA 249
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 309 PTKKQSHNHHGEHQVWRRRH 250
P + QSH+HH H R+RH
Sbjct: 163 PQQPQSHHHHHHHSGSRKRH 182
>05_06_0015 +
24953918-24954359,24955622-24955857,24955945-24956085,
24956188-24956619,24956847-24956948
Length = 450
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 428 LCIATSPCWPPNALLCKCCCCSNYWCVPADW--CTASAKTC 544
LC++ S C NA+ CC N +C P D+ C +++ C
Sbjct: 379 LCLSWSCCELDNAV----CCKDNRYCCPHDYPVCDTASQRC 415
>11_04_0228 +
15105752-15105921,15106774-15106919,15107369-15107448,
15107598-15107720,15107814-15107906
Length = 203
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 239 RSDWCRRRQTWCSPWWL*DCFFVGQ*TTNRWHLSNC 346
RS RR TW WWL C FV ++ W + C
Sbjct: 5 RSTTSRRCLTW---WWLACCCFVSWVASSSWTAAAC 37
>06_03_1470 + 30371391-30372353
Length = 320
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +2
Query: 464 ALLCKCCCCSNY-WC-VPADWCTASAKT 541
AL C CCS Y WC +D+C A ++
Sbjct: 28 ALCPNCLCCSQYGWCGSTSDYCGAGCQS 55
>02_01_0478 -
3442222-3442227,3442777-3442848,3442966-3443137,
3443388-3443500,3443771-3443908,3444016-3444221,
3444317-3444388,3444484-3444532,3444635-3444714,
3444817-3445132,3445242-3445415,3445513-3446139,
3446235-3446297,3446399-3446470,3446602-3446664,
3446741-3446872,3447779-3447889,3449273-3449371,
3450117-3450194
Length = 880
Score = 27.5 bits (58), Expect = 8.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 479 CCCCSNYWCVPADWCTASAKTC 544
CCC +C P C ++K+C
Sbjct: 618 CCCEGQAFCTPGTVCPPNSKSC 639
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,349,321
Number of Sequences: 37544
Number of extensions: 291746
Number of successful extensions: 959
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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