Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15g07
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical pr... 31 0.58
AF045644-1|AAC02601.1| 543|Caenorhabditis elegans Hypothetical ... 31 0.77
Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z81537-9|CAB04376.2| 673|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z81537-5|CAB04381.2| 673|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 4.1
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 4.1
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 4.1
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 28 4.1
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 25 5.1
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 25 5.1
U88182-2|AAB42308.4| 961|Caenorhabditis elegans Patched related... 28 5.4
AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical... 28 5.4
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 27 7.2
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm... 27 9.5
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm... 27 9.5
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ... 27 9.5
>U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical
protein F59A6.4 protein.
Length = 752
Score = 31.1 bits (67), Expect = 0.58
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = -2
Query: 419 NYKELAIDDDVEFWIPTIGNTTYHDS--WKDASGWSFIAQQKSNLITTMENTKFGGVGTS 246
N K+ DD+E WI T+ H S WK+ + + QQK +T +F
Sbjct: 286 NSKDQGRKDDLESWIYTLFYLIDHGSLSWKNEADSQIVVQQKDLFMTGDGKEQFSRAPRG 345
Query: 245 LNDITSMAEG 216
L + S G
Sbjct: 346 LAPLLSKVNG 355
>AF045644-1|AAC02601.1| 543|Caenorhabditis elegans Hypothetical
protein F57H12.5 protein.
Length = 543
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +3
Query: 423 KIYALRRV---RVGHPTPFFVNAVVVAITGVCRRI 518
KIY RV R GH ++NA V+ +T VCRR+
Sbjct: 253 KIYDENRVQLNRPGHEDVNYINASVITLTDVCRRM 287
>Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical
protein T22H2.6a protein.
Length = 358
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 449 CWP-PNALLCKCCCC-SNYWCVPADWCTASAKTCR 547
C P NA+ C+ CC + Y CV C AKT R
Sbjct: 309 CCPLSNAICCENTCCPAGYHCVDGGKCEKHAKTMR 343
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +2
Query: 473 CKCCCCSNYWCVPADWCTASAKTCRPTK 556
C CCCC C C +TC T+
Sbjct: 84 CGCCCCRPRCCCCCRRCCTCCRTCCCTR 111
>Z81537-9|CAB04376.2| 673|Caenorhabditis elegans Hypothetical
protein F41D3.10 protein.
Length = 673
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 491 YNNSIYKEGRWVANTDSSQCIDFSNYKELA 402
Y+++I K +W N S C+ + NY+ A
Sbjct: 398 YDDAILKNHQWDLNDQQSICVSYCNYEAYA 427
>Z81537-5|CAB04381.2| 673|Caenorhabditis elegans Hypothetical
protein F41D3.5 protein.
Length = 673
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 491 YNNSIYKEGRWVANTDSSQCIDFSNYKELA 402
Y+++I K +W N S C+ + NY+ A
Sbjct: 398 YDDAILKNHQWDLNDQQSICVSYCNYEAYA 427
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +2
Query: 473 CKCCCCSNYWCVPADWCTASAKTCRPTK 556
C CCCC C C +TC T+
Sbjct: 82 CGCCCCRPRCCCCCRRCCTCCRTCCCTR 109
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +2
Query: 473 CKCCCCSNYWCVPADWCTASAKTCRPTK 556
C CCCC C C +TC T+
Sbjct: 83 CGCCCCRPKCCCCCRRCCTCCRTCCCTR 110
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +2
Query: 473 CKCCCCSNYWCVPADWCTASAKTCRPTK 556
C CCCC C C +TC T+
Sbjct: 83 CGCCCCRPRCCCCCRRCCTCCRTCCCTR 110
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +2
Query: 473 CKCCCCSNYWCVPADWCTASAKTCRPTK 556
C CCCC C C +TC T+
Sbjct: 84 CGCCCCRPRCCCCCRRCCTCCRTCCCTR 111
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +2
Query: 431 CIATSPCWP---PNALLC--KCCCCSNYWCVPADWCTAS 532
CI S C PNA +C + C N WC+P C S
Sbjct: 1799 CICKSACEHVECPNAQVCILRKADCPNKWCLPVPTCEKS 1837
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 25.4 bits (53), Expect(2) = 5.1
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +2
Query: 410 PC---SC*NLCIATSPCWPPNALLCKCCC 487
PC C LC AT PN L KC C
Sbjct: 1000 PCRASQCTQLCFATPSESHPNELEAKCAC 1028
Score = 20.6 bits (41), Expect(2) = 5.1
Identities = 6/19 (31%), Positives = 8/19 (42%)
Frame = +2
Query: 488 CSNYWCVPADWCTASAKTC 544
C N C+P +W C
Sbjct: 1063 CKNGRCIPKEWKCDGENDC 1081
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 25.4 bits (53), Expect(2) = 5.1
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +2
Query: 410 PC---SC*NLCIATSPCWPPNALLCKCCC 487
PC C LC AT PN L KC C
Sbjct: 1000 PCRASQCTQLCFATPSESHPNELEAKCAC 1028
Score = 20.6 bits (41), Expect(2) = 5.1
Identities = 6/19 (31%), Positives = 8/19 (42%)
Frame = +2
Query: 488 CSNYWCVPADWCTASAKTC 544
C N C+P +W C
Sbjct: 1063 CKNGRCIPKEWKCDGENDC 1081
>U88182-2|AAB42308.4| 961|Caenorhabditis elegans Patched related
family protein 5 protein.
Length = 961
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = -2
Query: 365 GNTTYHDSWKDASGWSFIAQQKSNLITTMENTKFGGVGTSLNDITSMAEGELAAKLTSFM 186
G+ D KD S W A + S + + VGT + D M +G +
Sbjct: 271 GDRDSADKEKDLSRWELDAYEWSLNEHKSDIVEVQIVGTDVLDNEMMKDGRRLTPFFAAG 330
Query: 185 FGHVATFVIVFIVILFLY 132
FG TFV + +++ +Y
Sbjct: 331 FGFEITFVSLCVILTAVY 348
>AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical
protein B0238.12 protein.
Length = 166
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -2
Query: 524 CTNP-PAHTSNCYNNSIYKEGRWVANTDSSQCI 429
CTNP P T C NN +V N + QC+
Sbjct: 55 CTNPNPMCTKQCINNVCQCRSGYVRNEITRQCV 87
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +2
Query: 419 C*NLCIATSPCWPPNALLCKCCCCSNYWCVPADWCTASAKTCRPT 553
C + CIA C C C NY P A C+PT
Sbjct: 356 CESSCIARLSCVQTCMPACSPTCVQNYAAGPIQCAPACMPLCQPT 400
>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform a protein.
Length = 1117
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 557 FLSDDTFLLMPCTNPPAHTSNCYNNSI 477
F ++D + MPCT PP+ N+I
Sbjct: 327 FRAEDELISMPCTQPPSRPIKLVANAI 353
>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform b protein.
Length = 1122
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 557 FLSDDTFLLMPCTNPPAHTSNCYNNSI 477
F ++D + MPCT PP+ N+I
Sbjct: 327 FRAEDELISMPCTQPPSRPIKLVANAI 353
>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
tyrosine kinase protein.
Length = 1122
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 557 FLSDDTFLLMPCTNPPAHTSNCYNNSI 477
F ++D + MPCT PP+ N+I
Sbjct: 327 FRAEDELISMPCTQPPSRPIKLVANAI 353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,101,469
Number of Sequences: 27780
Number of extensions: 248555
Number of successful extensions: 967
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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