Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15g03
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 30 0.26
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2... 30 0.26
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 29 0.45
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.79
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 28 1.4
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 28 1.4
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 24 1.5
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 27 3.2
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 26 5.6
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 5.6
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 26 5.6
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc... 25 7.4
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 7.4
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 7.4
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 9.7
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 25 9.7
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 9.7
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 9.7
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.7
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 25 9.7
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -1
Query: 466 NYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFIVLSFKNEERLTIA 287
N +DNI + N++E ++ + ED S+H + T +V + S +N+ +
Sbjct: 967 NSTENDNITTENSSEIVQVIHTEDDSLHFDDNVSTDSVSLGNKSRISMDSMRNDCEAFLP 1026
Query: 286 KKNE 275
KK +
Sbjct: 1027 KKEK 1030
>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 30.3 bits (65), Expect = 0.26
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -1
Query: 457 YHDNIASNNNAENLKKVKKEDGSMHIV---EQYLTQNVDNVKGHNFIVLSFKNEERLTIA 287
Y +I N +N+ + +K++G + + E L + V H F++ K E
Sbjct: 31 YVKSIKETFNFDNVSEEEKQEGGDYYLGKKEDELDEVVLRPNPHRFVLFPIKYHEIWQFY 90
Query: 286 KKNEEFYWISGEI 248
KK E +W + EI
Sbjct: 91 KKAEASFWTAEEI 103
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 29.5 bits (63), Expect = 0.45
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = -1
Query: 568 NPPNKYVVDNLNLIVNKKSTLTYKYSSVANLL------FNNYKYHDNIASNNNAENLKKV 407
NP N + + ++ ++KS +TY + + NN +Y + +N+ +
Sbjct: 218 NPANFNETEQITIVSDEKSEVTYSHVQTRGSVPAFWAEVNNLRYKPLMVANSASMAAAAA 277
Query: 406 KKE-DGSMHIVEQYLTQNVDNVKGH 335
KK D + I + N+ N KGH
Sbjct: 278 KKHFDEQISIYGDQVVVNLVNCKGH 302
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 28.7 bits (61), Expect = 0.79
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +2
Query: 143 IVQCSALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARNPIKLFVFLS-YSQPLFVFER 319
+VQ +A+ FT ++ + SI + ++ S Y F L R I + + +S ++F
Sbjct: 125 LVQGAAMKIFSFT-FQTALPISIAIIWHVISTYGFALYRQRIVVGKHAAHFSLDHWIFVV 183
Query: 320 QYYKIVTFYIIHILSQIL 373
+YY + FY+ +++ L
Sbjct: 184 EYYAPIVFYVFNLMGFFL 201
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/102 (20%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Frame = -1
Query: 454 HDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFIV-LSFKNEERLTIAKKN 278
+D + A +++ K++D + + L + + VK + F + KN +++++
Sbjct: 37 YDTVVVIEGAPVVEEAKQQDFFRFLSSKVLAK-IGKVKENGFYMPFEEKNGKKMSLGLVF 95
Query: 277 EEFYWISGE---IKDVDASQVIQKYNRFKHHMFVISKVNRRE 161
+F + G ++++D Q++ K+H FV+ K+N+ E
Sbjct: 96 ADFENVDGADLCVQELDGKQIL------KNHTFVVRKLNQLE 131
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.9 bits (59), Expect = 1.4
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = -1
Query: 604 ILKYSESVKFPDNPPNKY-VVDNLNLIV---NKKSTLTYKYSSVANLLFNNYKYHDNIAS 437
+L Y E+ PD P + +NLN I+ K ST+ K L F +
Sbjct: 1225 LLMYGEN---PDEPTSSARFFNNLNEIILEYKKASTVNQKMEKEEELAFLRLQALKASVK 1281
Query: 436 NNNAENLKKVKKEDGS 389
+NNAEN K E+ S
Sbjct: 1282 SNNAENSGSSKNEEVS 1297
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 24.2 bits (50), Expect(2) = 1.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 517 KSTLTYKYSSVANLLFNNYKY 455
K TLTY Y+ LLFN++++
Sbjct: 568 KITLTYIYAIKLALLFNDFEF 588
Score = 21.8 bits (44), Expect(2) = 1.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 580 KFPDNPPNKYVVDNLNLIVNKKSTLTYK 497
KFP+ ++ V D LN+ + + S +K
Sbjct: 519 KFPEALNSRLVTDFLNIFLERGSVQLFK 546
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 227 LTSVYIFNLARNPIKLFVFLSYSQPLFVFERQYYKIVTFYIIHILSQILFDNV-HAAVLL 403
+T + I RN +L+ S QPL F+R + F+ + I S++ D + HA ++
Sbjct: 378 ITIMVIIIFLRNLAELYTTSSLDQPLLTFKRLKTLLAPFFWV-IGSELFVDWLKHAFIIK 436
Query: 404 LN 409
N
Sbjct: 437 FN 438
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 5.6
Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = -1
Query: 499 KYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQY-----LTQNVDNVKGH 335
+ S+A+L +K ++ N +KK++ ++ ++ Y +N+DNVK
Sbjct: 49 RIQSMASLGLERFKNLQSLCLRQN--QIKKIESVPETLTELDLYDNLIVRIENLDNVKNL 106
Query: 334 NFIVLSFKNEE---RLTIAKKNEEFYWISGEIKDVD 236
++ LSF N + + K E +++ I+ ++
Sbjct: 107 TYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIE 142
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 343 KGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYN 209
+GH ++ +E + AKK E ++ GE +D SQ +KY+
Sbjct: 523 EGHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQ-HEKYS 566
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 379 VEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKK 281
+E + QN+DN K + I++ N+E L I K+
Sbjct: 25 LEDRIHQNIDNTKDYRVIII---NDESLNIEKE 54
>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 445 IASNNNAENLKKVKKEDGSMHIVEQYLTQNVDN 347
I + N+ ENL ++H+V++YL +N
Sbjct: 68 ILNRNSPENLYLFINHPSNVHLVDRYLIHRTEN 100
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 7.4
Identities = 21/113 (18%), Positives = 48/113 (42%)
Frame = -1
Query: 547 VDNLNLIVNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQY 368
V LN +++ N + N ++Y DN +L++ + + E+
Sbjct: 561 VSELNGTIDEYRNKLKDKEETYNEVMNAFQYKDN--------DLRRFHESINKLQDREKE 612
Query: 367 LTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYN 209
LT N++ N ++ S + + ++ ++SG KD+D + +++ N
Sbjct: 613 LTSNLEK---KNLVISSLRETVAMLEKERESIKKYLSGNAKDLDNTNLMEILN 662
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -1
Query: 526 VNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVE 374
VNK + K V+N N D+IAS++ E+ ++ +H ++
Sbjct: 509 VNKLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIESSTPVVHPID 559
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 526 VNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVK 404
+ + + YKY A L+ N + + I +NN N +KVK
Sbjct: 718 ITEDPEVVYKYIQAACLM-NQFTEVERICRDNNVYNPEKVK 757
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 334 CDLLHYPHSESNTVRQCACC 393
CD ++ P +E T+ QC C
Sbjct: 125 CDTVYNPETEEGTMFQCILC 144
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 439 SNNNAENLKKVKKEDGSMHIVEQ 371
SNN+AE K+ K+ED S + V++
Sbjct: 326 SNNSAELAKETKEEDDSENSVDK 348
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 9.7
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Frame = -1
Query: 451 DNIASNNNAENLKKVKKE-DGSMHIVEQYLTQNVDNVK---GHNFIVLSFKNEERLTIAK 284
+N+ + E+LKK K+E +GS+ E+ L + V+N++ ++ + E+R I K
Sbjct: 115 NNLKTQKQIEDLKKEKEEMEGSLQGKEK-LEREVENLRKELDKYKDLVETEAEKRAAITK 173
Query: 283 KNEEFYWISGE--IKDVDA--SQVIQK 215
+ E W+ + KD++ + IQK
Sbjct: 174 EECEKSWLEQQKLYKDMEQENASTIQK 200
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 592 SESVKFPDNPPNKYVVDNLNLIVN 521
+ ++ D+ NKYV++NLN+I N
Sbjct: 209 ASTMSLTDDFYNKYVLENLNIINN 232
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 637 NNFFVSPYVSQILKYSESVKFPDNPPNKYVV 545
N F SP+ + K S S DNP NK ++
Sbjct: 376 NTTFESPFANVTSKISASGFSNDNPANKNII 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,251
Number of Sequences: 5004
Number of extensions: 46945
Number of successful extensions: 189
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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