Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g03
         (664 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86958-1|BAA13194.2| 1593|Homo sapiens KIAA0203 protein.               31   4.9  
BC017556-1|AAH17556.1| 1594|Homo sapiens RB1-inducible coiled-co...    31   4.9  
AB059622-1|BAB69690.1| 1594|Homo sapiens Rb1-inducible coiled co...    31   4.9  

>D86958-1|BAA13194.2| 1593|Homo sapiens KIAA0203 protein.
          Length = 1593

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
 Frame = -1

Query: 511  TLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDN----V 344
            TL  K+      L N Y+   +       EN  K+KK  G +  +E+ L QN DN    V
Sbjct: 860  TLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVL-QNKDNEFALV 918

Query: 343  KGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHM 191
            K     V+  +NE+   + +     +  + EIK++  S+ I   +  K H+
Sbjct: 919  KHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHV 969


>BC017556-1|AAH17556.1| 1594|Homo sapiens RB1-inducible coiled-coil 1
            protein.
          Length = 1594

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
 Frame = -1

Query: 511  TLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDN----V 344
            TL  K+      L N Y+   +       EN  K+KK  G +  +E+ L QN DN    V
Sbjct: 858  TLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVL-QNKDNEFALV 916

Query: 343  KGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHM 191
            K     V+  +NE+   + +     +  + EIK++  S+ I   +  K H+
Sbjct: 917  KHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHV 967


>AB059622-1|BAB69690.1| 1594|Homo sapiens Rb1-inducible coiled coil
            protein protein.
          Length = 1594

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
 Frame = -1

Query: 511  TLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDN----V 344
            TL  K+      L N Y+   +       EN  K+KK  G +  +E+ L QN DN    V
Sbjct: 858  TLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVL-QNKDNEFALV 916

Query: 343  KGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHM 191
            K     V+  +NE+   + +     +  + EIK++  S+ I   +  K H+
Sbjct: 917  KHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHV 967


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,950,713
Number of Sequences: 237096
Number of extensions: 1407819
Number of successful extensions: 6459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6459
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)