Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g02
         (120 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0531 - 3856343-3856373,3856426-3856506,3857972-3858097,385...    25   8.6  

>02_01_0531 -
           3856343-3856373,3856426-3856506,3857972-3858097,
           3858196-3858326,3858832-3858855,3859429-3859482,
           3859967-3860136,3860322-3860380,3861274-3861390,
           3861481-3861611,3861720-3861770,3862305-3862481
          Length = 383

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 77  LPTYSEPEKTTLIKRILRIYL 15
           L  Y +P+K T I R L IY+
Sbjct: 339 LRLYQDPKKDTYISRFLNIYM 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,674
Number of Sequences: 37544
Number of extensions: 15567
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 14,793,348
effective HSP length: 20
effective length of database: 14,042,468
effective search space used: 266806892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)