Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g01
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   131   2e-32
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   131   2e-32
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   2.9  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    23   8.8  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    23   8.8  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  131 bits (317), Expect = 2e-32
 Identities = 61/90 (67%), Positives = 67/90 (74%)
 Frame = -3

Query: 271 PVAKGATYGKPKSHGVNQLKPTRNXQSIXEERVGXRCGGLRVLXSXWVAQDSSYKYFEVI 92
           PV KG TYGKP   GVN LK  R+ +   EERVG  C  LRVL S WV QD++YK+FEVI
Sbjct: 74  PVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVI 133

Query: 91  LVDPSHKAIRRDXKINWIVNAVHKHREMXG 2
           LVDPSHKAIRRD +INWIVN VHKHRE  G
Sbjct: 134 LVDPSHKAIRRDPRINWIVNPVHKHRESRG 163


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  131 bits (317), Expect = 2e-32
 Identities = 61/90 (67%), Positives = 67/90 (74%)
 Frame = -3

Query: 271 PVAKGATYGKPKSHGVNQLKPTRNXQSIXEERVGXRCGGLRVLXSXWVAQDSSYKYFEVI 92
           PV KG TYGKP   GVN LK  R+ +   EERVG  C  LRVL S WV QD++YK+FEVI
Sbjct: 74  PVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVI 133

Query: 91  LVDPSHKAIRRDXKINWIVNAVHKHREMXG 2
           LVDPSHKAIRRD +INWIVN VHKHRE  G
Sbjct: 134 LVDPSHKAIRRDPRINWIVNPVHKHRESRG 163


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 191 GLXVARGLQLVDTMALGLAISGTLSNW 271
           GL VA G Q  DT+ LG+ I   +S++
Sbjct: 93  GLTVALGPQFPDTLVLGMEIRMQVSDY 119


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 124  QDSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHK 20
            +  S KY E     P H  +    K  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 219 WLTPWLLG 242
           WL+PWLLG
Sbjct: 196 WLSPWLLG 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,140,343
Number of Sequences: 5004
Number of extensions: 16571
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)