Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g01
         (327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...   126   5e-30
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...   126   5e-30
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     33   1e-04
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478     29   1.1  
05_02_0037 + 5883285-5884292                                           28   2.0  
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    27   2.6  
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    26   8.0  

>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score =  126 bits (303), Expect = 5e-30
 Identities = 55/90 (61%), Positives = 66/90 (73%)
 Frame = -3

Query: 271 PVAKGATYGKPKSHGVNQLKPTRNXQSIXEERVGXRCGGLRVLXSXWVAQDSSYKYFEVI 92
           PV KG  YGKPK  G+ QLK  RN +S+ EER G + GGLRVL S WV +DS+YKYFE+I
Sbjct: 179 PVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEII 238

Query: 91  LVDPSHKAIRRDXKINWIVNAVHKHREMXG 2
           LVD +H AIR D +INW+   VHKHRE+ G
Sbjct: 239 LVDVAHSAIRNDPRINWLCKPVHKHRELRG 268


>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score =  126 bits (303), Expect = 5e-30
 Identities = 55/90 (61%), Positives = 66/90 (73%)
 Frame = -3

Query: 271 PVAKGATYGKPKSHGVNQLKPTRNXQSIXEERVGXRCGGLRVLXSXWVAQDSSYKYFEVI 92
           PV KG  YGKPK  G+ QLK  RN +S+ EER G + GGLRVL S WV +DS+YKYFE+I
Sbjct: 74  PVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEII 133

Query: 91  LVDPSHKAIRRDXKINWIVNAVHKHREMXG 2
           LVD +H AIR D +INW+   VHKHRE+ G
Sbjct: 134 LVDVAHSAIRNDPRINWLCKPVHKHRELRG 163


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 33.1 bits (72), Expect(2) = 1e-04
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 271 PVAKGATYGKPKSHGVNQLKPTRNXQS 191
           PV KG  Y KPK  G+ QLK  RN ++
Sbjct: 269 PVHKGIVYSKPKHQGITQLKFQRNKRT 295



 Score = 28.3 bits (60), Expect(2) = 1e-04
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 103 FEVILVDPSHKAIRRDXK 50
           FE+ILVD +H AIR D K
Sbjct: 299 FEIILVDVAHSAIRDDPK 316


>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
          Length = 772

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 191 GLXVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDS 304
           G  V  G++ V  +ALGL ++GT   W L   T  +D+
Sbjct: 591 GSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDA 628


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 314 CCXQNPCATWWPQASSC*GC 255
           CC  +P + WWP+     GC
Sbjct: 304 CCWPSPPSVWWPRCGCGGGC 323


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 284 WPQASSC*G-CHLWQAQEPWCQPVEAH 207
           WPQ       CHL Q +EPW   ++AH
Sbjct: 46  WPQDQRWYQHCHLQQEEEPWRCQIKAH 72


>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +1

Query: 157 HRNDXQHAPXQWIEXCAWASTG*HHGSWACHKW 255
           HR   Q A  Q+     W S   HH  W   +W
Sbjct: 374 HRRILQEADFQYQFLVKWQSLSHHHDCWVPLEW 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,973,851
Number of Sequences: 37544
Number of extensions: 129811
Number of successful extensions: 243
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)