Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g01
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   126   3e-30
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    29   1.0  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    29   1.0  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   2.4  
AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical ...    26   7.4  
U10401-10|AAA19062.2|  476|Caenorhabditis elegans Hypothetical p...    25   9.7  
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    25   9.7  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  126 bits (305), Expect = 3e-30
 Identities = 54/90 (60%), Positives = 67/90 (74%)
 Frame = -3

Query: 271 PVAKGATYGKPKSHGVNQLKPTRNXQSIXEERVGXRCGGLRVLXSXWVAQDSSYKYFEVI 92
           PV KG TYGKPK+HGVN+LK  ++ Q++ E R G R G LRVL S WVA+DS+YK++EV+
Sbjct: 74  PVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVV 133

Query: 91  LVDPSHKAIRRDXKINWIVNAVHKHREMXG 2
           L+DP HKAIRR+    WI   VHKHRE  G
Sbjct: 134 LIDPFHKAIRRNPDTQWITKPVHKHREQRG 163


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 151 RVLXSXWVAQDSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHKHRE 11
           + L S W   D  Y  F  +L D + K      K++W V AVHK  E
Sbjct: 413 QALFSKW---DDEYDKFIALLRDINKKKRDDPSKLSWKVTAVHKRLE 456


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 151 RVLXSXWVAQDSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHKHRE 11
           + L S W   D  Y  F  +L D + K      K++W V AVHK  E
Sbjct: 413 QALFSKW---DDEYDKFIALLRDINKKKRDDPSKLSWKVTAVHKRLE 456


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/57 (29%), Positives = 20/57 (35%)
 Frame = +1

Query: 130 PXKXSTHGDHRNDXQHAPXQWIEXCAWASTG*HHGSWACHKWHP*QLDACGHHVAHG 300
           P     HG+H +   H         A A  G HHG    H  H     +  HH  HG
Sbjct: 452 PAHHGHHGEHHHAPAHHGHHGEHHHAPAHHG-HHGEHGTHHGHHGSHHSPAHHGHHG 507



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/57 (29%), Positives = 19/57 (33%)
 Frame = +1

Query: 148 HGDHRNDXQHAPXQWIEXCAWASTG*HHGSWACHKWHP*QLDACGHHVAHGF*XQHN 318
           H  H  +  HAP          S G HHG    H          GHH  HG    H+
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHH 616



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 19/61 (31%), Positives = 22/61 (36%)
 Frame = +1

Query: 118 NPVQPXKXSTHGDHRNDXQHAPXQWIEXCAWASTG*HHGSWACHKWHP*QLDACGHHVAH 297
           +P    +  TH  H  +  HAP          S G  H S A H  H     A  HH  H
Sbjct: 415 SPAHHGEHGTHHGHHGEHHHAPAHHGHH---ESHGHGHHSPAHHGHHGEHHHAPAHHGHH 471

Query: 298 G 300
           G
Sbjct: 472 G 472


>AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical
           protein T28C12.5 protein.
          Length = 539

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 202 CAWASTG*HHGSWACHKW 255
           C WA+T  HH    C KW
Sbjct: 212 CHWATTSNHHIREYCKKW 229


>U10401-10|AAA19062.2|  476|Caenorhabditis elegans Hypothetical
           protein T20B12.9 protein.
          Length = 476

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 244 KPKSHGVNQLKPTRNXQSIXEERVGXRCGGL 152
           K   H +NQ++ TR  +S  +E  G   GGL
Sbjct: 321 KVLGHWLNQIRKTRKKESKADEGGGGGVGGL 351


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y116F11B.3 protein.
          Length = 1042

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 191  GLXVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSXYNITLF 325
            GL VAR   LVD   +G+ + G ++  T  ATT+   + Y  TL+
Sbjct: 972  GLKVAR--DLVD-QNIGVWLGGQVNITTTTATTTSNSTSYPSTLY 1013


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,428,230
Number of Sequences: 27780
Number of extensions: 101623
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)