Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g01
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   2.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   2.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   2.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   6.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   8.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 106 TCMKNPVQPXKXSTHGDH 159
           T  +NP  P     HGDH
Sbjct: 327 TARENPGPPGVPGDHGDH 344


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 106 TCMKNPVQPXKXSTHGDH 159
           T  +NP  P     HGDH
Sbjct: 327 TARENPGPPGVPGDHGDH 344


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 106 TCMKNPVQPXKXSTHGDH 159
           T  +NP  P     HGDH
Sbjct: 266 TARENPGPPGVPGDHGDH 283


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 268 LDACGHHVAH 297
           + AC HH+ H
Sbjct: 567 IQACSHHLTH 576


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 236 LGLAISGTLSNWTLAATTSHTDSXYNITLF 325
           LG+A+S    N   +A +SH  +  N   F
Sbjct: 251 LGMALSHKTQNLYYSAMSSHNLNYVNTKQF 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,024
Number of Sequences: 438
Number of extensions: 1206
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)