Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15f22
(180 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces... 69 6e-14
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 30 0.047
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 1.3
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 24 3.1
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 23 4.0
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces... 23 4.0
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 23 4.0
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 23 4.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 23 4.0
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 23 5.3
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 23 5.3
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 23 7.1
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 23 7.1
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 23 7.1
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 22 9.3
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 22 9.3
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 22 9.3
>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 51
Score = 69.3 bits (162), Expect = 6e-14
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = -2
Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
M +HK+F K+KLAK +QNRPIPQW+R+RTGNT+ YN KRR
Sbjct: 1 MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRR 42
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 29.9 bits (64), Expect = 0.047
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 21 WTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSC 167
W P +I +S S HP PL +G VL + + NNK + + SC
Sbjct: 107 WQPAMLILDSKSI-HPLPLTDGEVLHRWECEVDSNNKTTIDLKYWYCSC 154
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 21 WTPLSVISNSVSCAHPYPLRNGS 89
+TP++V S++V+ AH Y GS
Sbjct: 984 YTPIAVASSTVNPAHTYKPHGGS 1006
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -2
Query: 107 KKLKQNRPIPQWVRMRTGNTI---RYNAKRRP 21
+K++ +P PQW++++ + R N RRP
Sbjct: 76 EKMEVPKPTPQWMKLKDEGKLGKHRKNRLRRP 107
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 23.4 bits (48), Expect = 4.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 6 LSFSRWTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNK 131
+S + TP +I+ + H L S L + +GQ A NNK
Sbjct: 346 ISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNK 387
>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 23.4 bits (48), Expect = 4.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 100 SFLANLRLIINVLWADILNNQVVKTKC 180
+F LR I++ W+D++ Q+ T C
Sbjct: 250 NFSTELRKIVSKKWSDVVPFQLPATYC 276
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 23.4 bits (48), Expect = 4.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 24 TPLSVISNSVSCAHPYPL 77
TP S +N V CA P PL
Sbjct: 345 TPQSFSTNIVQCASPSPL 362
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 23.4 bits (48), Expect = 4.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 137 KTFIIKRKLAKKLKQNRPIPQW 72
+T +K+KL K NRP+P W
Sbjct: 18 RTITVKQKLGK----NRPLPGW 35
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.4 bits (48), Expect = 4.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 145 RPIRRLLLSANWPKS*NKTD 86
RP++ +L N PKS K D
Sbjct: 1791 RPVKNVLFETNVPKSLRKVD 1810
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 13 SPGGRLLALYRIVFPVRILT 72
SP R LALY V VR+++
Sbjct: 232 SPNARYLALYESVGKVRVIS 251
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 97 FSFLANLRLIINVLWADILNNQVV 168
+ F ++ +IIN W D N VV
Sbjct: 256 YDFPEDMNMIINCEWCDFDNQHVV 279
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 134 TFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRP 21
T +I RKL +++ + P+ R R G + RP
Sbjct: 473 TTLINRKLREEVLREVFAPKHARRRLGTRFHSRSSHRP 510
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 99 QLFGQFALNNKRLMGRHFEQSSCQNKV 179
Q+ Q +++K LMG H E + N +
Sbjct: 401 QIVAQTHIDSKSLMGLHIELAPAANDI 427
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 22.6 bits (46), Expect = 7.1
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +3
Query: 30 LSVISNSVSCAHPYPL 77
L++++ S C HP+PL
Sbjct: 493 LALVTTSQVCRHPHPL 508
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 22.2 bits (45), Expect = 9.3
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +2
Query: 77 EEWVCFVSAFWPI 115
++W+ VS FWP+
Sbjct: 187 KQWINHVSDFWPL 199
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 128 IIKRKLAKKLKQNRPIPQWVRMR 60
+I++ +A+ K++R +PQ RMR
Sbjct: 587 VIEKAVARLKKEDRLLPQIGRMR 609
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 130 LLLSANWPKS*NKTDPFLSG 71
LL+ NW + K PF++G
Sbjct: 203 LLMDKNWDMTVQKVYPFING 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,818
Number of Sequences: 5004
Number of extensions: 11992
Number of successful extensions: 36
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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