Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15f22
(180 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944 77 2e-15
02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254 77 2e-15
02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907 77 2e-15
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124... 29 0.40
11_06_0478 + 24073295-24074172,24074790-24075090 29 0.70
12_02_0686 - 22076741-22077085 25 6.5
06_03_0981 + 26527005-26527260,26527457-26527770 25 6.5
10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376 25 8.6
04_04_0930 - 29480700-29480853,29481007-29483036 25 8.6
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 25 8.6
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 25 8.6
>06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944
Length = 51
Score = 77.4 bits (182), Expect = 2e-15
Identities = 33/42 (78%), Positives = 38/42 (90%)
Frame = -2
Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRR
Sbjct: 1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRR 42
>02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254
Length = 51
Score = 77.4 bits (182), Expect = 2e-15
Identities = 33/42 (78%), Positives = 38/42 (90%)
Frame = -2
Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRR
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRR 42
>02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907
Length = 51
Score = 77.4 bits (182), Expect = 2e-15
Identities = 33/42 (78%), Positives = 38/42 (90%)
Frame = -2
Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRR
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRR 42
>09_02_0565 +
10710770-10711003,10711368-10711527,10712277-10712477,
10712564-10712628,10712740-10712767,10712847-10712923,
10713023-10713109,10713572-10713622,10713857-10713937,
10714125-10714346,10714424-10714517,10714608-10714748,
10716383-10716444,10716519-10717106
Length = 696
Score = 29.5 bits (63), Expect = 0.40
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -2
Query: 137 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRPPGEGQS 3
K IIKR+ AK+L+Q P++ + TG +AK RP E S
Sbjct: 214 KETIIKREAAKRLEQTSEEPEYAPLPTGPGAVADAK-RPSDEAAS 257
>11_06_0478 + 24073295-24074172,24074790-24075090
Length = 392
Score = 28.7 bits (61), Expect = 0.70
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -3
Query: 166 QLDCSKCRPIRRLLLSANWPKS*NKTDPFLSG*GCAQETLF 44
QL C C + LSA WP K D F S G +E +F
Sbjct: 207 QLFCLMCWQVEYQYLSAEWPPPSYKIDAFSSRTGRWEERVF 247
>12_02_0686 - 22076741-22077085
Length = 114
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 86 PIPQWVRMRTGNTIRYNAKRRPPGEGQS 3
P+P R+R N IR K P EG S
Sbjct: 30 PVPYGARLRRENPIRRPRKPAEPEEGSS 57
>06_03_0981 + 26527005-26527260,26527457-26527770
Length = 189
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 2 SFVLLQVDAS*RYIE*CFLCASLPTEEWVCFVS 100
S L VD++ R+ LC++ P+ WV FVS
Sbjct: 114 SNTLTTVDSAFRFKSSHTLCSARPSPSWVRFVS 146
>10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376
Length = 418
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 56 GNTIRYNAKRRPP 18
GNTI Y +KR+PP
Sbjct: 173 GNTINYFSKRKPP 185
>04_04_0930 - 29480700-29480853,29481007-29483036
Length = 727
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 91 FCFSFLANLRLII 129
FCFSF+A+L LII
Sbjct: 9 FCFSFVASLALII 21
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 126 Y*AQIGQKAETKQTHSSVGKDAHRKHY 46
Y A++ Q E +Q+HS AH+ H+
Sbjct: 1679 YTARLTQDEERQQSHSMASTTAHQGHH 1705
>02_05_0046 -
25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +1
Query: 88 LFCFSFLANLRLIINVLWADILNNQV 165
++ F F N I++V+W +IL ++
Sbjct: 286 VYLFEFHGNAHAIVSVIWTNILGKRL 311
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,128,530
Number of Sequences: 37544
Number of extensions: 76533
Number of successful extensions: 205
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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