Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15f22
         (180 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57846-1|AAB02265.1|   51|Homo sapiens ribosomal protein L39 pro...    77   8e-15
D79205-1|BAA11465.1|   51|Homo sapiens ribosomal protein L39 pro...    77   8e-15
BC070205-1|AAH70205.1|   51|Homo sapiens ribosomal protein L39 p...    77   8e-15
BC001019-1|AAH01019.1|   51|Homo sapiens ribosomal protein L39 p...    77   8e-15
AB061835-1|BAB79473.1|   51|Homo sapiens ribosomal protein L39 p...    77   8e-15
AB209077-1|BAD92314.1|   70|Homo sapiens ribosomal protein L39 v...    76   2e-14
L05096-1|AAC15859.1|   51|Homo sapiens ribosomal protein L39 pro...    72   3e-13
BC012328-1|AAH12328.1|   51|Homo sapiens ribosomal protein L39-l...    72   3e-13
AF548529-1|AAN52397.1|   51|Homo sapiens ribosomal protein L39-2...    72   3e-13
AB063610-1|BAC19837.1|   51|Homo sapiens ribosomal protein L39-l...    72   3e-13
AB063607-1|BAC19834.1|   29|Homo sapiens ribosomal protein L39-l...    54   8e-08
AF333704-1|AAK73475.2| 3566|Homo sapiens CUB and sushi multiple ...    29   2.7  
AB209502-1|BAD92739.1| 2966|Homo sapiens CUB and Sushi multiple ...    29   2.7  
Y12395-1|CAA73027.1|  608|Homo sapiens interferon-related IFRD2 ...    29   3.5  
AB046411-1|BAB21257.1|   17|Homo sapiens ribosomal protein L39 p...    28   4.7  
BC013998-1|AAH13998.1|  324|Homo sapiens paired-like homeodomain...    27   8.2  
AL596218-4|CAI16462.1|  317|Homo sapiens CD55 molecule, decay ac...    27   8.2  
AL391597-3|CAH72947.1|  317|Homo sapiens CD55 molecule, decay ac...    27   8.2  
AF048722-1|AAC39718.1|  324|Homo sapiens ALL1 responsive protein...    27   8.2  

>U57846-1|AAB02265.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 34/42 (80%), Positives = 38/42 (90%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
           MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRR
Sbjct: 1   MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRR 42


>D79205-1|BAA11465.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 34/42 (80%), Positives = 38/42 (90%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
           MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRR
Sbjct: 1   MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRR 42


>BC070205-1|AAH70205.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 34/42 (80%), Positives = 38/42 (90%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
           MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRR
Sbjct: 1   MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRR 42


>BC001019-1|AAH01019.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 34/42 (80%), Positives = 38/42 (90%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
           MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRR
Sbjct: 1   MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRR 42


>AB061835-1|BAB79473.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 34/42 (80%), Positives = 38/42 (90%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
           MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRR
Sbjct: 1   MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRR 42


>AB209077-1|BAD92314.1|   70|Homo sapiens ribosomal protein L39
           variant protein.
          Length = 70

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 33/42 (78%), Positives = 38/42 (90%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
           MS+HKTF IK+ LAKK KQNRPIPQW+RM+TGN IRYN+KRR
Sbjct: 20  MSSHKTFKIKQFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRR 61


>L05096-1|AAC15859.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
           MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRR
Sbjct: 1   MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRR 42


>BC012328-1|AAH12328.1|   51|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 51

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
           MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRR
Sbjct: 1   MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRR 42


>AF548529-1|AAN52397.1|   51|Homo sapiens ribosomal protein L39-2
           protein.
          Length = 51

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
           MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRR
Sbjct: 1   MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRR 42


>AB063610-1|BAC19837.1|   51|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 51

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRR 24
           MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRR
Sbjct: 1   MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRR 42


>AB063607-1|BAC19834.1|   29|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 29

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 23/29 (79%), Positives = 26/29 (89%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKKLKQNRPIPQWVRM 63
           MS+HKTF IKR LAKK KQNRPIPQW++M
Sbjct: 1   MSSHKTFTIKRFLAKKQKQNRPIPQWIQM 29


>AF333704-1|AAK73475.2| 3566|Homo sapiens CUB and sushi multiple
            domains 1 protein protein.
          Length = 3566

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 18   RWTPLSVISNSVSCAHPYPLRNGSV 92
            RW P   +  +V C  P P++NG+V
Sbjct: 3086 RWNPSKPVCKAVLCPQPPPVQNGTV 3110


>AB209502-1|BAD92739.1| 2966|Homo sapiens CUB and Sushi multiple
            domains 1 variant protein.
          Length = 2966

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 18   RWTPLSVISNSVSCAHPYPLRNGSV 92
            RW P   +  +V C  P P++NG+V
Sbjct: 2501 RWNPSKPVCKAVLCPQPPPVQNGTV 2525


>Y12395-1|CAA73027.1|  608|Homo sapiens interferon-related IFRD2
           (PC4-B) protein protein.
          Length = 608

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 89  RPIPQWVRMRTGNTIRYNAKRRPPGEGQS 3
           RP+P   R R GNT+R   +RR  G   S
Sbjct: 162 RPVPGMPRARKGNTLRKGGQRRGGGARSS 190


>AB046411-1|BAB21257.1|   17|Homo sapiens ribosomal protein L39
           protein.
          Length = 17

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -2

Query: 149 MSAHKTFIIKRKLAKK 102
           MS+HKTF IKR LAKK
Sbjct: 1   MSSHKTFRIKRFLAKK 16


>BC013998-1|AAH13998.1|  324|Homo sapiens paired-like homeodomain
          transcription factor 2 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 24 TPLSVISNSVSCAHPYPLRNGSVL 95
          T LS +S+S SC HP PL   SVL
Sbjct: 17 TKLSAVSSS-SCHHPQPLAMASVL 39


>AL596218-4|CAI16462.1|  317|Homo sapiens CD55 molecule, decay
           accelerating factor for complement (Cromer blood group)
           protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 6   LSFSRWTPLSVISNSVSCAHPYPLRNGSV 92
           L  S+W+ +    N  SC +P  +RNG +
Sbjct: 82  LKGSQWSDIEEFCNQKSCPNPGEIRNGQI 110


>AL391597-3|CAH72947.1|  317|Homo sapiens CD55 molecule, decay
           accelerating factor for complement (Cromer blood group)
           protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 6   LSFSRWTPLSVISNSVSCAHPYPLRNGSV 92
           L  S+W+ +    N  SC +P  +RNG +
Sbjct: 82  LKGSQWSDIEEFCNQKSCPNPGEIRNGQI 110


>AF048722-1|AAC39718.1|  324|Homo sapiens ALL1 responsive protein
          ARP1c protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 24 TPLSVISNSVSCAHPYPLRNGSVL 95
          T LS +S+S SC HP PL   SVL
Sbjct: 17 TKLSAVSSS-SCHHPQPLAMASVL 39


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,288,482
Number of Sequences: 237096
Number of extensions: 436609
Number of successful extensions: 879
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 76,859,062
effective HSP length: 39
effective length of database: 67,612,318
effective search space used: 1352246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)