Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15f22
         (180 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   0.78 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   1.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   4.1  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    19   5.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    19   7.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    19   7.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                19   7.2  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           18   9.6  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           18   9.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 0.78
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 53 NTIRYNAKRRPPGE 12
          N  RY+   RPPGE
Sbjct: 19 NDCRYDKMTRPPGE 32



 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 21  WTPLSVISNSVSCA 62
           WTP   +SN  S A
Sbjct: 98  WTPTVYVSNEPSSA 111


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 10/47 (21%), Positives = 20/47 (42%)
 Frame = +3

Query: 21  WTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQS 161
           WTP ++  +S      Y   +    F  FG +  +  ++  +H  Q+
Sbjct: 135 WTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGIQIDLKHINQN 181


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 62  ASLPTEEWVCFVSAFWPIC 118
           ASLP   ++  V AF  +C
Sbjct: 296 ASLPPVSYLKAVDAFMSVC 314


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 27  PLSVISNSVSCAHPYPLRNGSVLFQLFGQFA 119
           P S+      CA PY  +N   L Q    FA
Sbjct: 13  PKSLKEPCDGCAAPYGYKNIMTLSQDTSHFA 43


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 10/53 (18%), Positives = 20/53 (37%)
 Frame = +3

Query: 21  WTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCQNKV 179
           W P ++  +       Y   +    F  FG +  +   +  RH  Q+   N++
Sbjct: 135 WKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYTVDLRHLAQTEDSNQI 187


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 33  SVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFE 155
           + +  SV    P    N + L ++ G+F L  +   G H E
Sbjct: 276 TTVRASVHIKLPKLAANRAKLEEIAGKFNLQVRGTRGEHTE 316


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 101 LKQNRPIP 78
           +KQNRP P
Sbjct: 226 IKQNRPTP 233


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 41 YNAKRRPPG 15
          YN + +PPG
Sbjct: 65 YNPEHKPPG 73


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 41 YNAKRRPPG 15
          YN + +PPG
Sbjct: 66 YNPEHKPPG 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,784
Number of Sequences: 438
Number of extensions: 965
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 39
effective length of database: 129,261
effective search space used:  2585220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)