Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15f18
(297 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 28 0.26
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 0.59
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 0.78
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 1.0
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 1.0
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 1.0
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 3.1
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 24 4.2
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 24 4.2
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 24 5.5
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi... 24 5.5
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 23 7.3
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 23 7.3
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 23 7.3
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 23 9.6
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 23 9.6
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 23 9.6
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 23 9.6
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.3 bits (60), Expect = 0.26
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = -3
Query: 280 KVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYCEQFITAIFE 113
KVY+ + +N +FNK +L A + Y++L+++ + S Q+IT ++E
Sbjct: 244 KVYETTLKRNAKIFNKELLLNSANHSLEAYMDLINDESRRSTAE---LQYITTLYE 296
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 27.1 bits (57), Expect = 0.59
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -3
Query: 172 SAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 20
S FG+ +C+ + FT S K W N +V ++H +N+
Sbjct: 120 SFFGNISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTIEHFYNV 170
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 26.6 bits (56), Expect = 0.78
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -3
Query: 292 LFMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNV-INYCEQFITAIF 116
LF K+ ++V E V+N L D I + + +D+SAFG I Y + + +F
Sbjct: 272 LFPSKLTPYVVTFVELVWNIIEKLLDPYIREVVFSDGLDDSAFGDKYPIRYLVELL--LF 329
Query: 115 EIFTLSSKIV 86
L SK V
Sbjct: 330 VSVALQSKFV 339
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 1.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 136 QFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 20
Q + A + ++L + P WEND LLK H +
Sbjct: 750 QLMVANLDTYSLDCYEIHEFPSEWENDYAPFLLKEHHKV 788
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 1.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 183 WSTSLRSAATLLTIANSLSRPFSKFLRSAVKSL 85
WSTS ++LL I + P SK L +KS+
Sbjct: 359 WSTSWEMLSSLLAIDFDVLLPHSKILWECIKSV 391
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 26.2 bits (55), Expect = 1.0
Identities = 10/43 (23%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = +2
Query: 131 KLFAIVNNVAAERR-LVDQIHICLIHNHC--IEQYVVFVKNAL 250
K+ +++++ +E + LVD+++ +++NHC +E+ + V+ +
Sbjct: 432 KIVTVLDSLTSEHKDLVDKVYTNVLNNHCKNLEKLIELVETTI 474
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 165 SAATLLTIANSLSRPFSKFLRSAVKSLWPC 76
SA TLL IA+ L + ++ +K LW C
Sbjct: 538 SALTLLPIADKLVQEKLSSCKNLLKVLWDC 567
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 24.2 bits (50), Expect = 4.2
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -3
Query: 160 SNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHL 29
SN+++ CE I+++++ ++ + + VP + N+ KHL
Sbjct: 70 SNLVSDCELKISSVYQSYSSTFNVSNHVPSISKTVNIRETSKHL 113
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 4.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 143 IVNNVAAERRLVDQIHICLIHNHC 214
+ N E+R +DQ+ L ++HC
Sbjct: 238 VEENAKEEQRCIDQVEQILTNHHC 261
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 23.8 bits (49), Expect = 5.5
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = -3
Query: 235 KHHVLFDAMIMYKTYVNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWEND 56
+ + L +++ Y++ N + +FGSN+ + EQ TA+ + + V+ V +E +
Sbjct: 232 RSYFLQESLHKYESTKNKIAYLSFGSNIGDKFEQIQTALSMLHKIEGIRVLDVSPLYETE 291
>SPBC146.11c |mug97|meu33|meiotically upregulated gene
Mug97|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 23.8 bits (49), Expect = 5.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 179 DQIHICLIHNHCIEQYVVFVKN 244
+Q+ +CL H H Y+ F K+
Sbjct: 166 NQVRVCLYHKHYSRWYLPFDKD 187
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 81 PCPSIGKTII*VYF*NICTT*ISW 10
P +G + +Y N CTT ISW
Sbjct: 410 PLNILGNNSVVLYNFNFCTTRISW 433
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 159 LPNADSSTKFTYVLYIIIASNNTWCLLK 242
L NA T+F V+YI+++ W K
Sbjct: 688 LANARFFTRFFRVIYIVLSKYTQWTTQK 715
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 23.4 bits (48), Expect = 7.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 134 VYHGHFRNFYAQQ*NRC 84
+ HG +++FY NRC
Sbjct: 516 ILHGGYKSFYENHKNRC 532
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 160 SNVINYCEQFITAIFEIFTLSSKIVVAVPVNW-ENDNLSVLLKHLHNL 20
S V ++C F +F+I L+ I +NW +N S +L ++ ++
Sbjct: 449 SAVHSFCGNFRRFMFDIVRLTVSITPIESLNWIQNRFQSTVLGNMEDI 496
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = -3
Query: 268 HLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDES 170
HL L++ ++ + M +++TYVN+++++
Sbjct: 285 HLDLRSVPIYYASSLARKCMAIFQTYVNMMNDN 317
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 157 NVINYCEQFITAIFEIFTLSSKIVVAVPVN-WEN 59
N+IN FIT + + ++V+ +P N W++
Sbjct: 116 NIINIIVVFITTLLTCLAFAIELVLFLPHNTWQS 149
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 86 NDFTAERKNFENGRDKL 136
N+ T RKNF N RD L
Sbjct: 787 NNLTEARKNFSNYRDCL 803
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,801
Number of Sequences: 5004
Number of extensions: 23487
Number of successful extensions: 84
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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