Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15f18
         (297 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    29   0.65 
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677...    29   0.86 
12_01_0538 - 4225321-4225689                                           26   4.6  
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989...    26   4.6  
03_02_0248 + 6783643-6783794,6784912-6784947,6785977-6785998,678...    26   6.0  
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136...    25   8.0  
02_04_0611 + 24347384-24350015,24350126-24350497,24350561-243508...    25   8.0  

>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -3

Query: 175 ESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 20
           E   G+NV+  CE    A+  +  +S  +V    + W  + L+ L  ++  +
Sbjct: 182 EPEAGANVVKSCESLFAALVGLTAVSLHLVETFLIKWRKEKLTQLTVYVFQM 233


>02_05_0003 -
           24867053-24867145,24867264-24867437,24867673-24867735,
           24868108-24868198,24869579-24869673,24870471-24870668,
           24871475-24871648,24872335-24872439,24872645-24872737,
           24873688-24873690,24874776-24874844,24875208-24875265,
           24875810-24875918,24876603-24876714,24877992-24878204,
           24878214-24878546
          Length = 660

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 286 MKKVYK-HLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYC 140
           ++KVY+   + +NEG+  +H+  F  + MY+ Y +          ++  C
Sbjct: 303 LEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNLAEEIVTRC 352


>12_01_0538 - 4225321-4225689
          Length = 122

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 77  HGHNDFTAERKNFENGRDKLFAIVNNVAAERRLV 178
           H   D++  R   + GR + FA+VNN+   RR V
Sbjct: 8   HWIQDYSVGRVTDDQGR-RAFALVNNLGGTRRAV 40


>04_04_1062 -
           30498158-30498271,30498358-30498518,30498606-30498924,
           30499412-30499477,30499601-30499726,30499821-30499961,
           30500482-30500535,30501508-30501636,30501733-30501870,
           30501993-30502061,30502135-30502203,30502468-30502623,
           30503795-30503895,30503986-30504136,30504475-30504520,
           30504539-30504637,30504796-30504928,30505018-30505195,
           30505282-30505524,30505612-30505680,30505986-30506085,
           30506898-30507007
          Length = 923

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 184 LVDESAFGSNVINYCEQFITAIFE 113
           L+DE+  GSNVI   E F T +F+
Sbjct: 329 LIDENRKGSNVIKVIEGFETIMFK 352


>03_02_0248 +
           6783643-6783794,6784912-6784947,6785977-6785998,
           6786368-6786440,6786541-6786638
          Length = 126

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 83  HNDFTAERKNFENGRDKLFAIVNNVAAERRLVD 181
           +  FT+   N  N + K  A  NN+ AE RLVD
Sbjct: 93  YEGFTSSTSNHVNLKGKDMATTNNI-AEERLVD 124


>06_01_0173 -
           1364219-1364836,1364941-1365123,1365215-1365470,
           1365551-1366120,1367066-1367178,1367344-1367816,
           1367906-1367984
          Length = 763

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/62 (30%), Positives = 23/62 (37%)
 Frame = +2

Query: 38  QKYT*IIVFPIDGHGHNDFTAERKNFENGRDKLFAIVNNVAAERRLVDQIHICLIHNHCI 217
           QKY   I   +D H H D  A  KN        FA+   V         +H+ L H   I
Sbjct: 357 QKYN--ISSIVDSHFHFDTKAYEKNGPLYLSTFFAVTYGVGFASLTATIVHVLLFHGSEI 414

Query: 218 EQ 223
            Q
Sbjct: 415 WQ 416


>02_04_0611 +
           24347384-24350015,24350126-24350497,24350561-24350805,
           24350997-24351059,24351919-24352422
          Length = 1271

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 103 LSSKIVVAVPVNWENDNLSVLLKHLHNLNLM 11
           L++  V+A P+N+   N+   L +L NLN+M
Sbjct: 173 LNNLSVLAFPLNFLTGNIPSTLGNLTNLNIM 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,597,967
Number of Sequences: 37544
Number of extensions: 128717
Number of successful extensions: 271
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)