Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15f18
         (297 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB037830-1|BAA92647.2| 2461|Homo sapiens KIAA1409 protein protein.     30   1.5  
BC150203-1|AAI50204.1|  816|Homo sapiens two pore segment channe...    28   6.2  
BC142664-1|AAI42665.1|  618|Homo sapiens TPCN1 protein protein.        28   6.2  
AY083666-1|AAM01199.1|  816|Homo sapiens two-pore channel 1 prot...    28   6.2  
AK075071-1|BAC11385.1|  252|Homo sapiens protein ( Homo sapiens ...    28   6.2  
AB032995-1|BAA86483.2|  857|Homo sapiens KIAA1169 protein protein.     28   6.2  

>AB037830-1|BAA92647.2| 2461|Homo sapiens KIAA1409 protein protein.
          Length = 2461

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = -3

Query: 223  LFDAMIMYKTYVNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSV 44
            LF A I  + +    ++SA  +N+ N  E   TAI       S++  ++     ++ + V
Sbjct: 2298 LFHAFIFAQLWTVYCEQSAVATNLQNQNEFSFTAILTALEFWSRVTPSILQLMAHNKVMV 2357

Query: 43   LLKHLHNLNLME 8
             +  LH ++LME
Sbjct: 2358 EMVCLHVISLME 2369


>BC150203-1|AAI50204.1|  816|Homo sapiens two pore segment channel 1
           protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 177 STKFTYVLYIIIASNNTWCLLKT 245
           S  F Y +Y+++A N  W L++T
Sbjct: 440 SKAFQYFMYLVVAVNGVWILVET 462


>BC142664-1|AAI42665.1|  618|Homo sapiens TPCN1 protein protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 177 STKFTYVLYIIIASNNTWCLLKT 245
           S  F Y +Y+++A N  W L++T
Sbjct: 440 SKAFQYFMYLVVAVNGVWILVET 462


>AY083666-1|AAM01199.1|  816|Homo sapiens two-pore channel 1
           protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 177 STKFTYVLYIIIASNNTWCLLKT 245
           S  F Y +Y+++A N  W L++T
Sbjct: 440 SKAFQYFMYLVVAVNGVWILVET 462


>AK075071-1|BAC11385.1|  252|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90590 fis, clone PLACE1001016, weakly similar to
           SODIUM CHANNEL PROTEIN PARA. ).
          Length = 252

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 177 STKFTYVLYIIIASNNTWCLLKT 245
           S  F Y +Y+++A N  W L++T
Sbjct: 74  SKAFQYFMYLVVAVNGVWILVET 96


>AB032995-1|BAA86483.2|  857|Homo sapiens KIAA1169 protein protein.
          Length = 857

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 177 STKFTYVLYIIIASNNTWCLLKT 245
           S  F Y +Y+++A N  W L++T
Sbjct: 481 SKAFQYFMYLVVAVNGVWILVET 503


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,432,409
Number of Sequences: 237096
Number of extensions: 723854
Number of successful extensions: 5330
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5330
length of database: 76,859,062
effective HSP length: 75
effective length of database: 59,076,862
effective search space used: 1358767826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)