Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15f18
         (297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna...    29   0.79 
Z70754-8|CAE17845.1|  188|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AC024783-1|AAY86294.1|  404|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z99710-4|CAB16865.1|  660|Caenorhabditis elegans Hypothetical pr...    26   5.6  
AF497825-1|AAM18103.1|  670|Caenorhabditis elegans putative Na-H...    26   5.6  
AF016447-15|AAR30208.1|  651|Caenorhabditis elegans Na/h exchang...    26   5.6  
AF016447-14|AAG24015.2|  670|Caenorhabditis elegans Na/h exchang...    26   5.6  
Z81524-4|CAB04250.1|  528|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z78544-2|CAB01758.1|  368|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z68134-1|CAA92226.2|  492|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U64842-10|AAB37080.1|  402|Caenorhabditis elegans Hypothetical p...    25   7.4  
AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm (myotubu...    25   7.4  
Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z50027-3|CAA90333.1|  190|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein2 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 139 EQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 17
           E+F   ++E F    K V     NW+ND   +L + + +++
Sbjct: 131 EEFRAKVYETFVAMEKAVTGEQENWKNDEHMMLWQQIKDIS 171


>Z70754-8|CAE17845.1|  188|Caenorhabditis elegans Hypothetical
           protein F58E6.11 protein.
          Length = 188

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +3

Query: 51  KLSFSQLTGTATTILLLSVKISKMAVINCSQ*LITLLPNADSSTKFTYVLYIIIASNNTW 230
           K+ +SQ+  T  T +L S  +    +   S  L  LL   DS+  F  +LY+  +  NT 
Sbjct: 31  KIFYSQIGFTVITFILGSRALLSSHIPFFSW-LPALLLLFDSTLAFASLLYLDFSRENTT 89

Query: 231 CLLK 242
           C L+
Sbjct: 90  CYLR 93


>AC024783-1|AAY86294.1|  404|Caenorhabditis elegans Hypothetical
           protein Y45G5AL.2 protein.
          Length = 404

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -3

Query: 256 KNEGVFNKHHVLFDAMIMYKTY-VNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVA 80
           K E  F+++   +  ++M   Y +N++   A   ++ N  E+F   +  I ++S  +V+ 
Sbjct: 252 KFEATFSRNPGFYIVLVMIPAYFINVLSIVALFMDINNRSEKFTVGMTNIMSMSFILVIL 311

Query: 79  VPVNWENDNLSVL 41
                +  NL +L
Sbjct: 312 AEDLPKTKNLPIL 324


>Z99710-4|CAB16865.1|  660|Caenorhabditis elegans Hypothetical
           protein F08A8.3 protein.
          Length = 660

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 83  HNDFTAERKNFENGRDKLFAIV---NNVAAERRLVDQIHICLIHNHCIEQYVVFV 238
           ++D T ERKN     DK+ A++     +A+ RR + +  I  IH     + +VF+
Sbjct: 9   NSDLTEERKNATFDTDKMAAVIYGREEIASRRRQLTE-SISRIHELAESKPLVFM 62


>AF497825-1|AAM18103.1|  670|Caenorhabditis elegans putative Na-H
           exchanger isoform 3 protein.
          Length = 670

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +3

Query: 69  LTGTATTILLLSVKISKMAVINCSQ*LITLLPNADSSTKFTYVLYIIIASNNTWCLLKTP 248
           + G  T     SVK     +  CS+ +I +     + T   +V +I I +   +CL+   
Sbjct: 307 IKGNITEAATNSVKYFTKMLAQCSETVIFMFLGLSTLTSEHHVDFIFIGATLVFCLIYRA 366

Query: 249 SFLSTKCLYTFFINK 293
             +  +C   F +NK
Sbjct: 367 IGIIVQC---FILNK 378


>AF016447-15|AAR30208.1|  651|Caenorhabditis elegans Na/h exchanger
           protein 3, isoform b protein.
          Length = 651

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +3

Query: 69  LTGTATTILLLSVKISKMAVINCSQ*LITLLPNADSSTKFTYVLYIIIASNNTWCLLKTP 248
           + G  T     SVK     +  CS+ +I +     + T   +V +I I +   +CL+   
Sbjct: 288 IKGNITEAATNSVKYFTKMLAQCSETVIFMFLGLSTLTSEHHVDFIFIGATLVFCLIYRA 347

Query: 249 SFLSTKCLYTFFINK 293
             +  +C   F +NK
Sbjct: 348 IGIIVQC---FILNK 359


>AF016447-14|AAG24015.2|  670|Caenorhabditis elegans Na/h exchanger
           protein 3, isoform a protein.
          Length = 670

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +3

Query: 69  LTGTATTILLLSVKISKMAVINCSQ*LITLLPNADSSTKFTYVLYIIIASNNTWCLLKTP 248
           + G  T     SVK     +  CS+ +I +     + T   +V +I I +   +CL+   
Sbjct: 307 IKGNITEAATNSVKYFTKMLAQCSETVIFMFLGLSTLTSEHHVDFIFIGATLVFCLIYRA 366

Query: 249 SFLSTKCLYTFFINK 293
             +  +C   F +NK
Sbjct: 367 IGIIVQC---FILNK 378


>Z81524-4|CAB04250.1|  528|Caenorhabditis elegans Hypothetical
           protein F32H5.4 protein.
          Length = 528

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -3

Query: 277 VYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYCEQFITAIFEIFTLS 98
           ++K  +L   GV+   HV         T ++        S V   C  +IT  + IF LS
Sbjct: 182 IFKGGLLSTYGVYKMEHVPRQHRFWIATMISWAPNYMILSFVAYLCHDWITYQYAIFALS 241


>Z78544-2|CAB01758.1|  368|Caenorhabditis elegans Hypothetical
           protein K04G11.3 protein.
          Length = 368

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 289 FMKKVYKHLVLKNEGVFNK--HHVLFDAMIMYKTYVNLVDES 170
           F K V++ +  K+   F+   HH+ F+  + Y  +  LVD S
Sbjct: 80  FPKNVHEKVTFKSWIGFSSVPHHLTFNRKVAYADWYGLVDSS 121


>Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical
           protein F55C5.7 protein.
          Length = 848

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 262 VLKNEGVFNKHHVLFDAMIMYKTYVNLVDES 170
           + KNEG +    +LF   + Y+  V + DES
Sbjct: 474 ITKNEGNYRGRRLLFTVGVDYERVVEMRDES 504


>Z68134-1|CAA92226.2|  492|Caenorhabditis elegans Hypothetical
           protein T27A8.1 protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 76  PVNWENDNLSVLLKHLHNLN 17
           P+N+ + N S L  H+HNL+
Sbjct: 53  PLNFSHMNYSTLTDHIHNLH 72


>U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical
           protein F45F2.5 protein.
          Length = 556

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 148 NYCEQFITAIFEIFTLSSKIVVAVPVNWENDNL 50
           N+C   +TAI+ +  +    V+ +   W ++ +
Sbjct: 33  NFCVNLMTAIYTLILIMVAFVIEISPTWRSEKM 65


>U64842-10|AAB37080.1|  402|Caenorhabditis elegans Hypothetical
           protein F25B4.1 protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 286 MKKVYKHLVLKNEGVFNKHHV-LFDAMIMYKTYVNLVDESAF 164
           M   Y    +K   +  + HV LFD   M +TY+   D  AF
Sbjct: 49  MPTQYADFSIKESTIHTRKHVSLFDVSHMLQTYITGKDRVAF 90


>AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm
           (myotubularin) family protein 1 protein.
          Length = 588

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -3

Query: 199 KTYVNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWE 62
           K Y   +DES + ++V +  E  + A+F + T    +++     W+
Sbjct: 338 KGYYKALDESKWLNHVQSILEGAVKAVFNVDTEKQSVLIHCSDGWD 383


>Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical
           protein C27A7.1b protein.
          Length = 824

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 108 KISKMAVINCSQ*LITLLPNADSS-TKFTYVLYIIIASNNTWCLLKTP 248
           K  KM VI+ +   I     ADS+ +  T++  I++  N+TW L+  P
Sbjct: 705 KFGKMYVISGTATDINHDGIADSNGSVITHIYRIMLICNSTWLLMNPP 752


>Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical
           protein C27A7.1a protein.
          Length = 829

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 108 KISKMAVINCSQ*LITLLPNADSS-TKFTYVLYIIIASNNTWCLLKTP 248
           K  KM VI+ +   I     ADS+ +  T++  I++  N+TW L+  P
Sbjct: 710 KFGKMYVISGTATDINHDGIADSNGSVITHIYRIMLICNSTWLLMNPP 757


>Z50027-3|CAA90333.1|  190|Caenorhabditis elegans Hypothetical
           protein C39B10.4 protein.
          Length = 190

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 231 CLLKTPSFLSTKCL 272
           C+LKT  FL  KCL
Sbjct: 152 CILKTSEFLDAKCL 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,028,961
Number of Sequences: 27780
Number of extensions: 130190
Number of successful extensions: 417
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)