Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15f07
         (218 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    19   4.6  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    19   6.1  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    19   8.1  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 19.4 bits (38), Expect = 4.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 191 SEPKREHYIAQ*FVKI 144
           +EPK  HY+   FV +
Sbjct: 89  NEPKLRHYLIFIFVNV 104


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 10/42 (23%), Positives = 15/42 (35%)
 Frame = +3

Query: 57  IFLYLQFSFCSANVIASDNGTRPCNIKANNFNKLLCNVVLSL 182
           I+ Y  F F          GT        NF  +   ++LS+
Sbjct: 320 IYFYWSFGFLIIQRFIHQIGTLEVAFTGKNFFSITRGLILSI 361


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 18.6 bits (36), Expect = 8.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 100 ITFAEQKLNCKYKKI 56
           + F E+KL C Y ++
Sbjct: 458 LVFDEEKLWCDYPEV 472


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,467
Number of Sequences: 336
Number of extensions: 518
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 45
effective length of database: 107,465
effective search space used:  2901555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)