Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15f05
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 111 5e-26
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 111 5e-26
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 111 5e-26
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 111 5e-26
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 111 5e-26
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 72 5e-14
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 46 3e-06
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 41 1e-04
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 33 0.037
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 28 0.79
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 1.4
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 2.4
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 4.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 5.6
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 7.3
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 7.3
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 7.3
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 7.3
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 9.7
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 25 9.7
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 111 bits (268), Expect = 5e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -2
Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 51 IQKESTLH 28
IQKESTLH
Sbjct: 61 IQKESTLH 68
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 111 bits (268), Expect = 5e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -2
Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 51 IQKESTLH 28
IQKESTLH
Sbjct: 61 IQKESTLH 68
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 111 bits (268), Expect = 5e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -2
Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 51 IQKESTLH 28
IQKESTLH
Sbjct: 61 IQKESTLH 68
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 111 bits (268), Expect = 5e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -2
Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 51 IQKESTLH 28
IQKESTLH
Sbjct: 61 IQKESTLH 68
Score = 111 bits (268), Expect = 5e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -2
Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 51 IQKESTLH 28
IQKESTLH
Sbjct: 137 IQKESTLH 144
Score = 111 bits (268), Expect = 5e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -2
Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 51 IQKESTLH 28
IQKESTLH
Sbjct: 213 IQKESTLH 220
Score = 111 bits (268), Expect = 5e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -2
Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 51 IQKESTLH 28
IQKESTLH
Sbjct: 289 IQKESTLH 296
Score = 111 bits (268), Expect = 5e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -2
Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 51 IQKESTLH 28
IQKESTLH
Sbjct: 365 IQKESTLH 372
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 111 bits (268), Expect = 5e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -2
Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 51 IQKESTLH 28
IQKESTLH
Sbjct: 61 IQKESTLH 68
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 72.1 bits (169), Expect = 5e-14
Identities = 31/68 (45%), Positives = 47/68 (69%)
Frame = -2
Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
M I +KTLTGK I + +P + V+ +K+++ +KEG+P QQRLI+AGKQ+ D K Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 51 IQKESTLH 28
++ S LH
Sbjct: 61 LEGGSVLH 68
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 46.4 bits (105), Expect = 3e-06
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = -2
Query: 231 MQIFIKTLTGKTITAETEPAET-VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADY 55
M + K L + A+T +++LK+KI ++ V++Q+LI++G+ L D KT+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 54 NIQKE 40
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/75 (26%), Positives = 39/75 (52%)
Frame = -2
Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
+ + IK + + +V LK+ IA + ++QRLI+AG+ L+D +++ Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 51 IQKESTLHHGVTISE 7
IQ ++H T+ +
Sbjct: 64 IQDGHSIHLVKTLGQ 78
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 32.7 bits (71), Expect = 0.037
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +2
Query: 230 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGRRAR 400
+F LLLI D+G + L +++ A DT+T +Y + +DF R +L G+ +
Sbjct: 8 LFKLLLIGDSGVGKSCL------LLRFADDTYTESYISTIGVDFKIRTFELEGKTVK 58
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 28.3 bits (60), Expect = 0.79
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -2
Query: 228 QIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMAD 58
+I + T+ K + +TV +LK+ IA P D+ +LI AG+ L + + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEE 61
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 230 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGRRAR 400
+ LLLI D+G + L +++ + D+ T ++ + IDF R +L G+R +
Sbjct: 9 LIKLLLIGDSGVGKSCL------LLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIK 59
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = -2
Query: 303 TIPPSVEARAHSQQPLSFISNSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGV 124
T+ +++ + S+ L+ I ++ +I K+L + +TE A+ +A + +KI E
Sbjct: 403 TLNRNIKVTSQSKDSLTSIVGDLESKI--KSLHESVSSLDTERADLLAKINEKIESLELE 460
Query: 123 PVDQQR 106
DQQ+
Sbjct: 461 KHDQQK 466
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 94 RKDKSLLIYGHTFFIGNFLLEIGHRLCGFRFGGNGFARQCFD 219
RK+ +YGH F F + LCG F N QC D
Sbjct: 396 RKESVHEVYGHKFLQHQFYQIMRCALCG-EFLKNAAGMQCID 436
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 235 KNANIHQNIDGQNHYRRNGTRRDGGRSQAKN 143
K+ N Q+I G+++ R+N GRS N
Sbjct: 1518 KDKNKRQDISGESNSRQNNAISRAGRSNGSN 1548
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 482 LFALFLKQ*STYQNDKMDKKSFESIYRFLHVGLIIFD 372
LFALF K + MD + +Y+ H G+I+FD
Sbjct: 630 LFALFSKCKNDLVVYVMDSVTGSIVYQNKHQGIILFD 666
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 64 HSFGIFQLFARKDKSLLIYGH 126
H FGIF + D S+ YGH
Sbjct: 260 HVFGIFVQYPAADGSIFDYGH 280
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = -2
Query: 174 AETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHHGVTISE 7
A T+A+ K+ I Q ++ +ED+ ++ ++++ +HHGVTIS+
Sbjct: 317 ATTLAEYKKYIEKDAAFERRFQIILVKEPSIEDTISILR-GLKEKYEVHHGVTISD 371
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -2
Query: 171 ETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
E ++D +IAD D++++I+A + + + +AD+N
Sbjct: 534 ELLSDHNFEIADLRDELQDKEQIIYALRYAQKQRDIADFN 573
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -2
Query: 180 EPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDS-KTMADYNIQKES 37
EPA + L ++ +D+E D++ F G L+ S KT+ D+ ++E+
Sbjct: 26 EPASSRRRLAEENSDEENEEFDEEGGRFFGSGLKKSEKTVLDFLDEQEA 74
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 303 TIPPSVEARAHSQQPLSFISNS 238
T+ PS RAHSQ P S + N+
Sbjct: 59 TMRPSALTRAHSQNPNSSLVNN 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,111
Number of Sequences: 5004
Number of extensions: 48476
Number of successful extensions: 143
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -