Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15f05
         (550 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    115   1e-27
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    31   0.019
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    27   0.54 
DQ230893-2|ABD94312.1|  525|Anopheles gambiae iduronate 2-sulfat...    25   1.6  
DQ013245-1|AAY34441.1|  487|Anopheles gambiae adrenodoxin reduct...    24   3.8  
AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.           24   3.8  
AY583530-1|AAS93544.1|  260|Anopheles gambiae NOS protein protein.     24   3.8  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   5.0  
AJ618923-1|CAF02002.1|  155|Anopheles gambiae odorant-binding pr...    23   6.6  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   8.8  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    23   8.8  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   8.8  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  115 bits (276), Expect = 1e-27
 Identities = 51/68 (75%), Positives = 61/68 (89%)
 Frame = -2

Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
           MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 51  IQKESTLH 28
           IQKESTLH
Sbjct: 61  IQKESTLH 68



 Score =  115 bits (276), Expect = 1e-27
 Identities = 51/68 (75%), Positives = 61/68 (89%)
 Frame = -2

Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
           MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 51  IQKESTLH 28
           IQKESTLH
Sbjct: 137 IQKESTLH 144



 Score =  115 bits (276), Expect = 1e-27
 Identities = 51/68 (75%), Positives = 61/68 (89%)
 Frame = -2

Query: 231 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 52
           MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 51  IQKESTLH 28
           IQKESTLH
Sbjct: 213 IQKESTLH 220


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 31.5 bits (68), Expect = 0.019
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 224 YSSKH*RAKPLPP-KRNPQRRWPISSKKLPIKKVCP*INKDLSLRANNWKIPKLWPITIF 48
           Y + H   + +PP +RNP+RR P S  + P  +  P   +  S R  +W  P+  P +  
Sbjct: 240 YKNAHASIRKIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRSTRPTSW--PRSRPTSKP 297

Query: 47  KR 42
           KR
Sbjct: 298 KR 299


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 246 SNSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVD-QQRLIFAGKQ 85
           + +VK    ++T+  + I  ETE A+   DL+ +I   EG  V+   +  F+G Q
Sbjct: 339 AGNVKSLGQMETVEIRFIDEETEAADVERDLRNQITGLEGYKVEVTMKTSFSGMQ 393


>DQ230893-2|ABD94312.1|  525|Anopheles gambiae iduronate 2-sulfatase
           precursor protein.
          Length = 525

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 332 NYFPSTAIDFHARNQKLSGRRARSDRCFQTTSYPSYHSDMYFTV 463
           N F   A+   +RN  L+GRR  + R +   SY    S  Y T+
Sbjct: 71  NAFAQQALCAPSRNSMLTGRRPDTVRLYDFYSYWRQTSGNYTTL 114


>DQ013245-1|AAY34441.1|  487|Anopheles gambiae adrenodoxin reductase
           protein.
          Length = 487

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 37  RFLLNIVIGHSFGIFQLFARKDKSLLIYG 123
           RFL N+ +G  F + +L  R    LL YG
Sbjct: 99  RFLGNLCLGKDFTLEELRERYHAVLLTYG 127


>AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.
          Length = 259

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +1

Query: 448 YVLYCFKNSANKKLHKSQLC 507
           + ++CF N A++++++S  C
Sbjct: 155 HCVFCFNNKADREVYESHRC 174


>AY583530-1|AAS93544.1|  260|Anopheles gambiae NOS protein protein.
          Length = 260

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +1

Query: 448 YVLYCFKNSANKKLHKSQLC 507
           + ++CF N A++++++S  C
Sbjct: 156 HCVFCFNNKADREVYESHRC 175


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 141 ADKEGVPVDQQRLIFAGKQLEDSKTM 64
           A  E  PVD   L+   K +ED KT+
Sbjct: 166 AQAEDYPVDLYYLMDLSKSMEDDKTI 191


>AJ618923-1|CAF02002.1|  155|Anopheles gambiae odorant-binding
           protein OBPjj5c protein.
          Length = 155

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 279 LPPPMVELCNRRPIPT 326
           LP  ++E C  RP+P+
Sbjct: 5   LPEQVIETCRARPLPS 20


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 419 TTSYPSYHSDMYFTVLKIAQIK-NC 490
           T+S+P  H D+Y+    IA ++ NC
Sbjct: 339 TSSFPDPHRDVYWWTPLIALLRQNC 363


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 276 PLPPPMVELCNRRPIPTPRIISLQRQLISTPVIKNYQADVQEA 404
           PLPP   EL    P P P   S   + +     +  +AD +EA
Sbjct: 53  PLPPNGDELPEDAPEPVPEDGSPDEEHLEEEQEEEAEADEEEA 95


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 332  NYFPSTAIDFHARNQKLSGRRARSD 406
            N   +TA D H    +L+GR A++D
Sbjct: 1463 NATKNTARDLHHEADQLNGRLAKTD 1487


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,654
Number of Sequences: 2352
Number of extensions: 11985
Number of successful extensions: 30
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)