Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15f03
(438 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 172 8e-44
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 172 8e-44
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.1
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 1.1
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 1.1
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 1.1
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 29 1.5
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 29 1.5
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 29 1.5
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kin... 28 3.4
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z73974-8|CAA98274.2| 526|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z73905-7|CAA98112.2| 526|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 27 7.9
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 172 bits (419), Expect = 8e-44
Identities = 80/126 (63%), Positives = 100/126 (79%), Gaps = 2/126 (1%)
Frame = -1
Query: 399 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 220
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 219 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 46
KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K + +FEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 45 RYKSGK 28
RYK+GK
Sbjct: 121 RYKTGK 126
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 172 bits (419), Expect = 8e-44
Identities = 80/126 (63%), Positives = 100/126 (79%), Gaps = 2/126 (1%)
Frame = -1
Query: 399 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 220
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 219 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 46
KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K + +FEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 45 RYKSGK 28
RYK+GK
Sbjct: 121 RYKTGK 126
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -1
Query: 393 KIMKPGKVVLVLSGRYAGRKAIVVK 319
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 270 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 121
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 270 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 121
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 270 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 121
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 29.1 bits (62), Expect = 1.5
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -1
Query: 300 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 139
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 138 --DFS-FEKFSAKDLKDP 94
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 29.1 bits (62), Expect = 1.5
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -1
Query: 300 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 139
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 138 --DFS-FEKFSAKDLKDP 94
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 29.1 bits (62), Expect = 1.5
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -1
Query: 300 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 139
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 395
Query: 138 --DFS-FEKFSAKDLKDP 94
D S F+ F +DL P
Sbjct: 396 IDDTSNFDDFPDEDLTWP 413
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 333 PCDPRTGHLRPALLYPASLSYPSWRDIPFTR*H 431
P D TGH RPAL P PS + +P + H
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS-QSVPKAQAH 581
>Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kinase
protein.
Length = 404
Score = 27.9 bits (59), Expect = 3.4
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -1
Query: 300 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 139
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 344
Query: 138 --DFS-FEKFSAKDLKDP 94
D S F+ F +DL P
Sbjct: 345 IDDTSNFDDFPDEDLTWP 362
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 270 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 121
AG++R V + N+ KR KI + YNHL+P T+D+S K
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430
>Z73974-8|CAA98274.2| 526|Caenorhabditis elegans Hypothetical
protein F29F11.2 protein.
Length = 526
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 4 SFWKNHLXLPTFVPLFKTYSRVETQL 81
+FWKN + TF+P + + R+ T++
Sbjct: 97 TFWKNDFGILTFIPAIERFFRMFTKV 122
>Z73905-7|CAA98112.2| 526|Caenorhabditis elegans Hypothetical
protein F29F11.2 protein.
Length = 526
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 4 SFWKNHLXLPTFVPLFKTYSRVETQL 81
+FWKN + TF+P + + R+ T++
Sbjct: 97 TFWKNDFGILTFIPAIERFFRMFTKV 122
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 299 PTSRTGMPSSLVSTGTPGKCTRGWERIKSTRGP 201
P G P + + G PG+ RG +R GP
Sbjct: 175 PAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGP 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,118,152
Number of Sequences: 27780
Number of extensions: 206358
Number of successful extensions: 750
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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