Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15f02
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    31   0.91 
01_06_0203 - 27487469-27489787                                         28   6.4  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   8.5  

>04_01_0508 +
           6647812-6647820,6647864-6648226,6649351-6650673,
           6653569-6653766,6654485-6654568,6655175-6655920,
           6656480-6657341
          Length = 1194

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 26/104 (25%), Positives = 46/104 (44%)
 Frame = -3

Query: 671 PWK*PSRCWEIFRNKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIP 492
           PW+ PS     F N  +TR + ++V S+    +        N T+     +     +S+P
Sbjct: 161 PWRFPSVHAFSFHNSRNTRTMHSIVASSCDCTYAILDDEHGNTTDAFRTTIRRIT-SSMP 219

Query: 491 GEPILFTENEGVLLCSVDRPSIVKMLSREFDTEALVNFENDNCN 360
            E  L  E + V+L S+  P +   +S   D +A+  + N + N
Sbjct: 220 IEVKLICEEKNVVLSSIQAPLVSYFISS--DKKAITIWANAHPN 261


>01_06_0203 - 27487469-27489787
          Length = 772

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 278 DYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSL 135
           DYD +L  +S+   + +  +T   IVE  Y+H    KN G+ EY   L
Sbjct: 249 DYDGNLRIYSLDASDGSWTVTWQAIVEMHYVHGMCGKN-GICEYLPEL 295


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 398 TEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 234
           TE   N  + + N  I+K      +K+TTR DD  +  Q    M+LS+   T  E
Sbjct: 525 TEDDANLASSSKNTMISKHHNTVDQKSTTRKDDSRNRSQK--IMELSEVRGTNTE 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,055,924
Number of Sequences: 37544
Number of extensions: 324514
Number of successful extensions: 897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)