Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e23
         (517 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   2.8  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   3.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.7  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   6.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 145  PNSVHTRVITPPPMGK*T*GL-DPLS 219
            P SVH+  + PPP    T  L DP S
Sbjct: 1796 PPSVHSSTVVPPPQHSTTQSLVDPKS 1821



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 57   STRAVKSSTTSRPET 13
            +TR   +STT+RP T
Sbjct: 1062 TTRPTTTSTTTRPTT 1076


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 435 HDRTEIPMIIVNNPEQPIHNPGALNTPS 352
           HD +++   +  + +Q  H P  LN PS
Sbjct: 359 HDPSQLLRHVEESDKQRTHQPFLLNIPS 386


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 57  STRAVKSSTTSRPETVKS 4
           S +  +SSTT +P+T K+
Sbjct: 415 SEQPTESSTTQKPQTTKT 432


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 316 DAVVLEVTASLG*RSI*CSWIMNGLF 393
           D V ++ T S G   +  SW +NG F
Sbjct: 619 DGVSVQCTVSKGDYPLNISWTLNGHF 644


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 287 IIGVDEEKARMPWF*R 334
           +IG D   A+ PWF R
Sbjct: 183 LIGEDNISAKNPWFPR 198


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 109 PSSPVPTAPQTDSLVQSFDPSGQ 41
           P+S   +   +DSLVQ   PSG+
Sbjct: 80  PNSRCNSRESSDSLVQPRCPSGE 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,907
Number of Sequences: 336
Number of extensions: 2300
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)