Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e23
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    29   0.31 
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    26   2.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   2.9  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   8.9  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   8.9  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   8.9  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    25   8.9  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   8.9  

>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -1

Query: 148 LADSPNQAARSAFPSSPVPTAP 83
           LAD+ NQA  +A P+S  PTAP
Sbjct: 220 LADAKNQAEGTASPASSTPTAP 241


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 489 VSLCKL--YRYYKINKPNDAHDRTEIPMIIVN 400
           ++LC +  Y YY+I K N      E+  I++N
Sbjct: 340 ITLCGIGVYNYYRITKGNKKEAEKEVEYIVLN 371


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -2

Query: 459 KINKPNDAHDRTEIPMIIVNNPEQPIHNPGALNTPSPKTRRNL*NHGILAFSSS 298
           +I  P   +  T I    V N   PI +   LNT +P T  ++ N      SSS
Sbjct: 371 QITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSSTPITSSS 424


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 453 NKPNDAHDRTEIPMIIVNNPEQPI 382
           N  NDA    E P +++NN   P+
Sbjct: 139 NMANDASKENETPYMVLNNKFNPV 162


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 402 NNPEQPIHNPGALNTPSPKTRRNL*NHGILA 310
           N+P  PI N   +    P T RNL  H I A
Sbjct: 396 NDPMNPILNGSVVRLIHPFTNRNLHTHKIPA 426


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 160 YEHYLADSPNQAARSAFPSSPVPTAPQTDSLVQSFDPSGQV 38
           +EH       +A +S F SSP   +    S V+   PS ++
Sbjct: 430 FEHQPLSKDTEAPKSQFSSSPTKESTTRKSEVEPPSPSKEI 470


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 388 LFWIVYDDHWDLCAIVSVVGLIYFIIAIQFT*RYN 492
           LFW VY D+  L AI S+   ++ ++ + FT +++
Sbjct: 10  LFWNVYSDYAVLIAI-SLSYFVFDVLMLPFTRQFS 43


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 136 PNQAARSAFPSSPVPTAP 83
           PN A  SA P  P PT P
Sbjct: 579 PNSAMPSAMPMYPTPTMP 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,124
Number of Sequences: 5004
Number of extensions: 36669
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)