Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e23
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like ...    28   3.4  
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like
           protease protein 2 protein.
          Length = 893

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 136 PNQAARSAFPSSPVPTAPQTDSLVQSFDPSGQVF 35
           PN    S  PS+P    P T  +V+   P  Q+F
Sbjct: 491 PNTQQGSCLPSTPTAALPPTRPVVEKIPPDTQLF 524


>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
            W06A7.3f protein.
          Length = 2488

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 477  KLYRYYKINKPNDAHDRTEIPMIIVNN---PEQPIHNPGALNTPSPKT 343
            KL R Y   +  +  +  E P+ I+     PE+P  + GAL+  SP T
Sbjct: 1665 KLGRTYSEEQQKELVESLERPLTIITQQKPPEKPTEDIGALSPLSPNT 1712


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
            W06A7.3c protein.
          Length = 2484

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 477  KLYRYYKINKPNDAHDRTEIPMIIVNN---PEQPIHNPGALNTPSPKT 343
            KL R Y   +  +  +  E P+ I+     PE+P  + GAL+  SP T
Sbjct: 1665 KLGRTYSEEQQKELVESLERPLTIITQQKPPEKPTEDIGALSPLSPNT 1712


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
            W06A7.3a protein.
          Length = 2607

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 477  KLYRYYKINKPNDAHDRTEIPMIIVNN---PEQPIHNPGALNTPSPKT 343
            KL R Y   +  +  +  E P+ I+     PE+P  + GAL+  SP T
Sbjct: 1665 KLGRTYSEEQQKELVESLERPLTIITQQKPPEKPTEDIGALSPLSPNT 1712


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,896,382
Number of Sequences: 27780
Number of extensions: 205485
Number of successful extensions: 593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)