Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e23
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    28   0.050
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    28   0.050
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   10.0 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   10.0 

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 0.050
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 142 DSPNQAARSAFPSSPVPTAPQTDSLVQ--SFDPSG 44
           D+ N +  S  P SP+   P T SL+   +F PSG
Sbjct: 33  DNSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSG 67


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 0.050
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 142 DSPNQAARSAFPSSPVPTAPQTDSLVQ--SFDPSG 44
           D+ N +  S  P SP+   P T SL+   +F PSG
Sbjct: 33  DNSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSG 67


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 165 PSMNTIWLTALTKLHDQHSRALLFRPP 85
           P+  T+ +T+L  L  QH+++    PP
Sbjct: 274 PARVTLGVTSLLTLSTQHAKSQASLPP 300


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 517 VISNSNPNYCIFM*TVSL 464
           VI +  P YC+F  TV+L
Sbjct: 523 VIGHRMPRYCLFGNTVNL 540


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 517 VISNSNPNYCIFM*TVSL 464
           VI +  P YC+F  TV+L
Sbjct: 523 VIGHRMPRYCLFGNTVNL 540


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 465 YYKINKPNDAH 433
           YYK+NK +DA+
Sbjct: 73  YYKLNKIHDAY 83


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 452  ISPTTLTIAQRSQ*SS*TIQNNP 384
            I+PTT+T +Q       TIQ  P
Sbjct: 1277 IAPTTITSSQSPGNQQQTIQTQP 1299


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 2   EDLTVSGREVVEDLTARVER 61
           EDL+VSG   +E++ + V R
Sbjct: 451 EDLSVSGEAGIEEVKSPVLR 470


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 2   EDLTVSGREVVEDLTARVER 61
           EDL+VSG   +E++ + V R
Sbjct: 451 EDLSVSGEAGIEEVKSPVLR 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,972
Number of Sequences: 438
Number of extensions: 2719
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)