Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e21
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    28   0.37 
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   1.1  
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    25   3.4  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   3.4  
SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyce...    25   3.4  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    24   4.5  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    24   5.9  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    23   7.9  

>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 309 EVVNMNLDVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPVYK 172
           EV+    ++PY     H  +E   L L+L      EP+ F  P YK
Sbjct: 753 EVIEEFKEIPYLDPLEHMHIESSTLSLSLRKLEILEPKLFDSPYYK 798


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 288 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPV 178
           ++PY    NHE++  IPL+   N +I   P Q   P+
Sbjct: 390 NIPYSPNSNHEEINSIPLR---NKNIFVPPSQGHSPL 423


>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 267 GNHEKVEYIPLKLALNDDITSEP 199
           G    +E+ P K+ + DD+T EP
Sbjct: 138 GRSYHLEFNPPKVPMKDDVTGEP 160


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 290 WTCHTIGWATTKRWNTSR*NWRSTMISPANRNNLASPFTK 171
           WTC T  +AT ++ +T +    +   + A  NNL    T+
Sbjct: 303 WTCATCSFATQRKKSTFQKENANVDANHATENNLEGQATQ 342


>SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 240 PLKLAL-NDDITSEPQQFSEPVYKMPIDDXMVGYN 139
           P + A+ N +  + PQ F EP +  P D  M G N
Sbjct: 87  PFEQAIPNYNWANPPQDFEEPEWLKPFDVVMEGTN 121


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 193 LLRFAGDIIVERQFQRDVFHLFV 261
           L+RFAG I+ E Q Q     LFV
Sbjct: 787 LVRFAGGILTEDQLQPGKVALFV 809


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 207 SEPQQFSEPVYKMPIDD 157
           +EP  FS P++K P D+
Sbjct: 207 AEPDMFSFPIFKKPDDE 223


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 82  YSFIFTIVXNILXRNIKRXQSTNIRI 5
           Y   F  + N+L R +K  + TN+++
Sbjct: 740 YGVDFDEILNVLLRFLKEVEDTNVKV 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 964,359
Number of Sequences: 5004
Number of extensions: 13688
Number of successful extensions: 40
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)