Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e20
         (257 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...   122   3e-29
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    29   0.34 
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    27   2.4  
AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical ...    27   2.4  
U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone...    25   5.6  
AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear recep...    25   5.6  
AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear recep...    25   5.6  
Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical...    25   7.4  
Z75550-9|CAE54924.1| 1291|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z75550-8|CAA99926.1| 1307|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AF067937-8|AAF99914.2|  232|Caenorhabditis elegans Hypothetical ...    25   9.8  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score =  122 bits (295), Expect = 3e-29
 Identities = 55/69 (79%), Positives = 64/69 (92%)
 Frame = -1

Query: 209 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 30
           MP+EIK+IKDFL+KARRKDAKSVKIKKN  N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60

Query: 29  PPGLQVKEV 3
           PPG+QVKE+
Sbjct: 61  PPGIQVKEL 69


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 160 GKTPNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRN 44
           G+  NR++   T+  S+S+  A  S  P+SS+T  R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 179 FLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 69
           F  K+R+ + K  K++KN ENV+   R  + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559


>AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical
           protein F52C6.11 protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 218 VFNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRCSRFLYTL 75
           +++MP  IK  ++FL+ +  K  K  +K+ K  +    K  C   + TL
Sbjct: 226 LYDMPFPIKRCEEFLVDSSEKSTKEKLKVAKKYQLENLKASCLAKINTL 274


>U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 44 protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 215 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 108
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 215 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 108
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 215 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 108
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 148 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182


>Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical
           protein C27B7.5 protein.
          Length = 386

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 83  YTLVITDKEKAEKLKQSLPP 24
           Y + IT K  AEKL + +PP
Sbjct: 299 YVMTITGKGPAEKLMKEVPP 318


>AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical
           protein R52.1 protein.
          Length = 326

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 215 FNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRC 96
           F MP  I+  ++FLI+   K  K  +K+ K  +    K  C
Sbjct: 225 FTMPLPIQKCEEFLIEKSEKSVKEKLKLVKKYQLKSLKTHC 265


>Z75550-9|CAE54924.1| 1291|Caenorhabditis elegans Hypothetical
           protein T22C1.10b protein.
          Length = 1291

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 129 LLYFDRFGVFPP 164
           +LYFDRF +F P
Sbjct: 164 MLYFDRFSIFEP 175


>Z75550-8|CAA99926.1| 1307|Caenorhabditis elegans Hypothetical
           protein T22C1.10a protein.
          Length = 1307

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 129 LLYFDRFGVFPP 164
           +LYFDRF +F P
Sbjct: 180 MLYFDRFSIFEP 191


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 145 RSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK 5
           RS  RR+ R SSS+   + + T   +  KRR R+ S+  ++ S  +K
Sbjct: 156 RSSRRRSRRRSSSKARGRRASTAKKTPAKRRSRSRSQQKVKRSMSRK 202


>U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical
           protein T27E4.6 protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 200 EIKDIKDFLIKARRKDAKSVKIKKNPEN 117
           E    KD   ++   D  S KIKK+PEN
Sbjct: 732 EDDSFKDTSNRSDNTDGSSKKIKKSPEN 759


>AF067937-8|AAF99914.2|  232|Caenorhabditis elegans Hypothetical
           protein F22F7.7 protein.
          Length = 232

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 1   FTSLTWRPGGKLCLSFSAFSLSVMTRVYR-NLEHR 102
           + SL W PG     S  A+++    R+Y+ N  HR
Sbjct: 55  YGSLIWNPGFTFSTSRKAYAIGWARRMYQGNTYHR 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,524,885
Number of Sequences: 27780
Number of extensions: 91265
Number of successful extensions: 317
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)