Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15e19
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.32
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.56
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 0.56
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 29 0.74
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 28 1.3
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 2.3
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 3.0
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 3.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 3.9
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 26 5.2
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 5.2
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 5.2
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.2
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 5.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 5.2
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 6.9
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 6.9
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 9.1
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.32
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = -1
Query: 584 AFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 405
AF H F ++ + N +E N + P+L T+ L +D P ++++ +
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437
Query: 404 FDTEALVNF 378
+T ++NF
Sbjct: 1438 ENTPLILNF 1446
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 29.1 bits (62), Expect = 0.56
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +1
Query: 370 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLV 543
S S +++SV + I + GLS ++ + + + +G+P +S VSVT N ++
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236
Query: 544 KLVTSGW---NLLCIKANVLN 597
+ T+GW N C+ V N
Sbjct: 237 TVNTNGWTSSNFKCVDDVVAN 257
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 29.1 bits (62), Expect = 0.56
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1
Query: 353 IAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 234
IAK G+SKRK+ + YE++K P DL + S T+ E
Sbjct: 116 IAKFLGSSKRKSKELIEAYEASKTPP---DLKEESSTDEE 152
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.7 bits (61), Expect = 0.74
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 16 EFEFILSKSSMVNLNLLNSKLDVFVLIVDRNLL 114
E + +L +N +LNS+ DV + ++D+NLL
Sbjct: 40 EAKLLLPNGMSLNETVLNSESDVVIYVLDQNLL 72
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -1
Query: 392 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSI 246
+L NF++DNC ++ + S R N S+ S D+DL +++
Sbjct: 223 SLANFQSDNCKLKSHNSL-PSIRTNVRYSNSKPSTPLSPEDVDLGTYTV 270
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -1
Query: 206 IVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMST---KTSNLLLSKFKFTIEDF 36
I+ H++L + + Y +F CK T ++ L + + + S +L + +F+ +
Sbjct: 259 IIRHSFLLTAVRQTYNIFLLCKDSTTQAIAQVALLQMVDSVFQRLSTVLNHEREFSTINM 318
Query: 35 DKINSNSVTSR 3
+K +SN R
Sbjct: 319 NKSSSNGTPDR 329
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 492 GNACVISFSDHKLHFVSKISNK 557
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 275 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYI 174
YD D+S FS+ + A + + L L E Y +YY+
Sbjct: 185 YDPDMSKFSLGRISACREIWLAL--ECGYRYYYM 216
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 191 YLHYYIFKNYGVFEYCKSLTDHSLFTN 111
+L Y+ K YG+ YC L ++SL N
Sbjct: 2483 HLLVYLSKTYGLHHYCILLLENSLQNN 2509
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 584 AFIHNRFHPLV---TNFTNKMEFVVTETNDTS 498
AFI N++ PLV T++TN V +TN S
Sbjct: 112 AFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.2
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -1
Query: 410 REFDTEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFS 249
R+ TE + N V++AK +F K+KNTT S ES+ D D S
Sbjct: 6 RKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKK-KDSS 64
Query: 248 ITEVE 234
+ E E
Sbjct: 65 LNESE 69
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 489 SGNACVISFSDHKLHFVSKISNKW 560
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 346 LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 462
L I+ QLSFS+ S + SRL +T+ + TP
Sbjct: 889 LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/71 (21%), Positives = 29/71 (40%)
Frame = -1
Query: 341 FGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNY 162
F S +NTT +DD+ ++ D + E + L+ +V H + ++ Y
Sbjct: 795 FKPSNHENTTSNDDHAMDEDLDDSPEEETLKDEEEIGIRLAHLIFLVGHVAIKQLVYIEY 854
Query: 161 GVFEYCKSLTD 129
E+ + D
Sbjct: 855 CEAEFKRRKAD 865
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/90 (20%), Positives = 36/90 (40%)
Frame = -1
Query: 341 FGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNY 162
FG K +D + + + D++ + ++ + + L L+ +LH +I
Sbjct: 349 FGHIDEKTIRSTDPFANRENLDFN-SIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPR 407
Query: 161 GVFEYCKSLTDHSLFTNKLRSTMSTKTSNL 72
GV + T +L L + STK +
Sbjct: 408 GVLFHGPPGTGKTLMARVLAANCSTKNQKI 437
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 529 SILLVKLVTSGWNLLCIKANV 591
S +L L+ GW ++C ANV
Sbjct: 19 SCILAWLIEEGWEVICYMANV 39
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = -1
Query: 386 VNFENDNCNVRIAKTFGASKRK------NTTRSDDYESNKQPDYDMDLSDFSITEVEATQ 225
++ E++ +V G++KRK N ++ E+N++P D+ LSD + +
Sbjct: 126 IDGEDEKKSVGQESITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDIGGLDDCINE 185
Query: 224 YLTLLLI-VEHAYLHYY 177
L L+ + ++H ++ Y
Sbjct: 186 LLELVAMPIKHPEVYQY 202
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +1
Query: 511 VSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSAL 630
+S+ TNS L VKL ++ + C+ + + ++ ++ ++ L
Sbjct: 905 ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITIL 944
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,667
Number of Sequences: 5004
Number of extensions: 47201
Number of successful extensions: 180
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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