Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e18
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    27   1.7  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    26   3.8  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   8.8  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  

>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/51 (23%), Positives = 30/51 (58%)
 Frame = +3

Query: 156 WDHTGSVGFLIKEESSKSIHPVKSCEEINKHLKKTYSRIENLLLF*SRLKK 308
           ++ TG+   ++++   + + P+   EE+ +H K + +R+E  L +  +L+K
Sbjct: 167 YELTGAWLVVLRQLEDRPVVPLLPLEELEEHNKTSQNRMEEALNYLKQLQK 217


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 438 KLCTWFPKNTSSVTFITGR*PLNNIKFS 521
           ++C + P N SS+T  TGR   NNI F+
Sbjct: 123 EMCCFLP-NQSSITMYTGRLLNNNIGFA 149


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 189 KEESSKSIHPVKSCEEINKHLKKTYSRIENLLLF*SRLKK 308
           KEE+ K +  + SC E  K L+K Y+R+ NL  F   +KK
Sbjct: 92  KEEAIKLLERLDSCTETVKKLEK-YTRL-NLTGFFKIVKK 129


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 240 NKHLKKTYSRIENLLLF*SRLKKPLHLKDLDCERMR*NSTE 362
           NK++ +  + I NL +F     +PLH+K L   R R   T+
Sbjct: 220 NKYVLENLNIINNLQIFLHLDLEPLHIKSLAKARKRFYETD 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,521
Number of Sequences: 5004
Number of extensions: 42390
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)