Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e16
         (245 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   1.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    20   3.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   3.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    20   3.4  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    19   6.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    19   7.9  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 139 RIPNICVAHFKKLNCFSLTSNK 204
           R PNIC      L  F  T+N+
Sbjct: 319 RTPNICYKLLSNLGIFPKTTNE 340


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 102 RSCSNRHGLIRKYGLNIC 49
           R C+  HGL+    LNIC
Sbjct: 473 RKCN--HGLVYDLELNIC 488


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -3

Query: 105 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 4
           C++      +I K   N CR C  +   ++G  K
Sbjct: 74  CKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNK 107


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -3

Query: 105 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 4
           C++      +I K   N CR C  +   ++G  K
Sbjct: 74  CKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNK 107


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 193 TSNKLDTPSRW 225
           T NK D PS W
Sbjct: 129 TQNKNDDPSYW 139


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 19.0 bits (37), Expect = 7.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 124 RTRISVMPILLQQAWLNPQVRFEHMQTVL 38
           R +++   +L  Q  L+P +RF  + T L
Sbjct: 250 RPKMTPQSLLPSQTGLSPYLRFGCLSTRL 278


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,604
Number of Sequences: 336
Number of extensions: 1151
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used:  3749515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)