Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e15
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical...    28   6.9  
AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical...    28   6.9  
AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding p...    28   6.9  
AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding p...    28   6.9  
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z71262-9|CAA95817.2|  440|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AY037797-1|AAK94762.1|  412|Caenorhabditis elegans GLY-18 protein.     27   9.2  

>AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35b protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -3

Query: 561 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 382
           T  E  E K+ +  +N +NC   R N     K+        ++    +N+M +N  +  +
Sbjct: 261 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 320

Query: 381 KSD 373
           +++
Sbjct: 321 ETN 323


>AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35a protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -3

Query: 561 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 382
           T  E  E K+ +  +N +NC   R N     K+        ++    +N+M +N  +  +
Sbjct: 278 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 337

Query: 381 KSD 373
           +++
Sbjct: 338 ETN 340


>AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -3

Query: 561 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 382
           T  E  E K+ +  +N +NC   R N     K+        ++    +N+M +N  +  +
Sbjct: 278 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 337

Query: 381 KSD 373
           +++
Sbjct: 338 ETN 340


>AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -3

Query: 561 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 382
           T  E  E K+ +  +N +NC   R N     K+        ++    +N+M +N  +  +
Sbjct: 261 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 320

Query: 381 KSD 373
           +++
Sbjct: 321 ETN 323


>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical
           protein C54D10.7 protein.
          Length = 1144

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -3

Query: 570 VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFI 391
           VN+ R +L +  ++     L++    R     S KR        ++S+++EN+ S  K  
Sbjct: 32  VNALR-KLQDDSQSAHQKALKDAEENRRQYEESAKRSEQAANERIRSQIDENNKSIEKLR 90

Query: 390 VQFKSDD 370
            QFK  D
Sbjct: 91  AQFKEQD 97


>Z71262-9|CAA95817.2|  440|Caenorhabditis elegans Hypothetical
           protein F22D6.11 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 651 ENQIFTIYNIKCQQIFNGANVYMNWNVVNSTRIE 550
           EN +    +I C  IFNG+       +VNS  IE
Sbjct: 53  ENDLLDDLDINCLNIFNGSKNRNQLRIVNSRSIE 86


>AY037797-1|AAK94762.1|  412|Caenorhabditis elegans GLY-18 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 651 ENQIFTIYNIKCQQIFNGANVYMNWNVVNSTRIE 550
           EN +    +I C  IFNG+       +VNS  IE
Sbjct: 25  ENDLLDDLDINCLNIFNGSKNRNQLRIVNSRSIE 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,962
Number of Sequences: 27780
Number of extensions: 270727
Number of successful extensions: 873
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)