Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15e13
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 171 5e-44
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 29 0.57
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 27 2.3
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.0
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.0
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 9.2
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.2
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.2
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 171 bits (417), Expect = 5e-44
Identities = 93/205 (45%), Positives = 121/205 (59%), Gaps = 1/205 (0%)
Frame = -3
Query: 636 LAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTPAERKTWSQGTSPL 460
L +KS++ GY PSQAD VF+ VG AP A P+ RWY QIA+Y A T P
Sbjct: 19 LLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA--------TLPG 70
Query: 459 XXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKAYADKKSKKPALIAKS 280
++DLFGS + Y KK+ KP + KS
Sbjct: 71 TAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERVAE-YNKKKAAKPKAVHKS 129
Query: 279 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 100
+ LDVKPWDDET M E+E VR+I+M+GL+WG SKLVPVG+G+NK QI V+EDDKVS+
Sbjct: 130 LVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSL 189
Query: 99 DLLTEKIQEFEDFVQSVDIAAFNKI 25
+ L E+++ FED+VQS DIAA +K+
Sbjct: 190 EALQEELEGFEDYVQSTDIAAMSKL 214
>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 422
Score = 29.1 bits (62), Expect = 0.57
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 1 NITCYGCLDFVKCSNVNRLYKIFKFLNFFCQQINRNFVVLDDTHNLQFIYAI 156
NITC LD + N N +Y + + I ++ L D H FIY I
Sbjct: 82 NITCIYDLDIINPYNFNEVYIYEELMEADLNAIIKSGQPLTDAHFQSFIYQI 133
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 469 GALRPSFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 579
G L S F ++ + +I+PS +G GR + LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 172 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 279
FG S HF+ Y VF IG I P W++ N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 150 INKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNK 28
INK Q+M E ++ ++DLL++ EF + + D+ K
Sbjct: 151 INKWQVMTAFELNEENLDLLSQYCSEF--LIHAADVEGLCK 189
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 458 PPVLNPRLPPQQRKTTMTT 402
PPVL P LPP Q T T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 318 DKKSKKPALIAKSSILLDVKPWDDETDMKEME 223
DK+S P LIA++ + ++ D+ +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 519 DYTIVVRGEG*RPAPCQLAQILEHQLE 599
+Y +VV G G P C + L QLE
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLE 334
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 25.0 bits (52), Expect = 9.2
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 12/55 (21%)
Frame = +1
Query: 10 CYGCLDFVKCSN-VNRLYKI-FKF----------LNFFCQQINRNFVVLDDTHNL 138
C+ + +KCSN VN Y + F F LN+ Q+I N ++L ++HN+
Sbjct: 115 CFSRANPIKCSNQVNTQYSVSFLFTIMASVLISVLNYISQKIFLNGLILGNSHNV 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,179
Number of Sequences: 5004
Number of extensions: 48200
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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