Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e13
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...   149   2e-36
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...   146   2e-35
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...   138   5e-33
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    29   2.4  

>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score =  149 bits (361), Expect = 2e-36
 Identities = 94/212 (44%), Positives = 115/212 (54%), Gaps = 8/212 (3%)
 Frame = -3

Query: 636 LAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA-----SYTPAERKTWSQG 472
           L  +SY+SGY  S+ D+ VF  +  APAA+  +V RWY+ I+     S   AE +     
Sbjct: 40  LLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAEGEGVKVE 99

Query: 471 TSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKAYADKKSKKPAL 292
           ++                     DVDLFG                  +A A K S K   
Sbjct: 100 STACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE------RAAAVKASGKKKE 153

Query: 291 IAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDD 112
             KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYGI KLQIM  I DD
Sbjct: 154 SGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDD 213

Query: 111 KVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 25
            VSVD L E     +   +F+QS DI AFNKI
Sbjct: 214 LVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 245


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score =  146 bits (353), Expect = 2e-35
 Identities = 91/211 (43%), Positives = 114/211 (54%), Gaps = 7/211 (3%)
 Frame = -3

Query: 636 LAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKTWSQGTS--- 466
           L+ K+YVSG   S+ D++VF  V   P A  P+  RWY+ +A+   +     + G +   
Sbjct: 21  LSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPG 80

Query: 465 -PLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKAYADKKSKKPALI 289
                                 D+DLFG                  +  A K S K    
Sbjct: 81  GGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD-------ERAASKASSKKKES 133

Query: 288 AKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDK 109
            KSS+LLDVKPWDDETDMK++E  VR+++MEGL WGASKLVPVGYGI KLQIM  I DD 
Sbjct: 134 GKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDL 193

Query: 108 VSVD-LLTEKIQE--FEDFVQSVDIAAFNKI 25
           VSVD L+ E + E    +FVQS DI AFNKI
Sbjct: 194 VSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score =  138 bits (333), Expect = 5e-33
 Identities = 90/215 (41%), Positives = 110/215 (51%), Gaps = 11/215 (5%)
 Frame = -3

Query: 636 LAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----ASYTPAER---KTW 481
           L  +SY+SGY  S  D+ V+     AP+++  +V RW+  I      S   A+    K  
Sbjct: 21  LLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTADGQGVKVE 80

Query: 480 SQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKAYADKKSKK 301
           S                         DVDLFG                  +A A K S K
Sbjct: 81  STAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE------RAAAVKASGK 134

Query: 300 PALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVI 121
                KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYGI KLQIM  I
Sbjct: 135 KKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTI 194

Query: 120 EDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 25
            DD VSVD L E     +   +++QS DI AFNKI
Sbjct: 195 VDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
 Frame = -3

Query: 636 LAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 514
           L++KS +  +G+ PS AD+ VF  +       G+      PHVLRW + I
Sbjct: 83  LSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,612
Number of Sequences: 37544
Number of extensions: 332940
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)