Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e13
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   197   6e-51
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...   151   3e-37
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    31   0.53 
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    30   1.6  
AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical p...    27   8.6  
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical...    27   8.6  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    27   8.6  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  197 bits (480), Expect = 6e-51
 Identities = 109/208 (52%), Positives = 135/208 (64%), Gaps = 4/208 (1%)
 Frame = -3

Query: 636 LAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTPAERKTWSQ--GTS 466
           LAE+++ +G+  S  D Q+F  +G AP A+  P+V RWY  +ASYT AERKTW+   G++
Sbjct: 18  LAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVASYTDAERKTWASAGGSA 77

Query: 465 PLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKAYADKKSKKPALIA 286
           P                      DLFGS               RL AYA+KK+KK   IA
Sbjct: 78  PAAAAADGDDF------------DLFGSDDEEEDAEKAKIVEERLAAYAEKKAKKAGPIA 125

Query: 285 KSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKV 106
           KSS++LDVKPWDDETD+ EME  VR+IEM+GL+WG +KL+P+GYGI KLQI+ VIED KV
Sbjct: 126 KSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKV 185

Query: 105 SVDLLTEKIQ-EFEDFVQSVDIAAFNKI 25
           SVD L EKI  +FED VQSVDI AFNKI
Sbjct: 186 SVDDLIEKITGDFEDHVQSVDIVAFNKI 213


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =  151 bits (367), Expect = 3e-37
 Identities = 79/125 (63%), Positives = 91/125 (72%), Gaps = 1/125 (0%)
 Frame = -3

Query: 396 DLFGSGXXXXXXXXXXXXXXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQ 217
           DLFGS               RL AYA KK+ K   IAKSS++LDVKPWDDETD+ EME  
Sbjct: 139 DLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKL 198

Query: 216 VRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQ-EFEDFVQSVDIA 40
           VR+IEM+GL+WG +KL+P+GYGI KLQI+ VIED KVSVD L EKI  +FED VQSVDI 
Sbjct: 199 VRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSVDIV 258

Query: 39  AFNKI 25
           AFNKI
Sbjct: 259 AFNKI 263


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 495 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 632
           QP CM   + + VV+     PAP Q     + Q +++C+QT+   Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAPVQCVPQCQQQCQQQCVQTQPIQQ 171


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = -3

Query: 279 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 100
           SI+L VKP DDE  ++++ NQ     M G LW A++     Y   ++     I    V V
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSYVCVRVLKFLYIMCKSVLV 489

Query: 99  DLLTEK 82
             +T K
Sbjct: 490 HFITPK 495


>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -3

Query: 204 EMEGLLWGASKLVPVGYGINKLQIMC----VIEDDKVSVDLLTEKIQEFEDFVQ 55
           E E  L G+  LVPV    N+LQI+C       DD V +   T +  E  D ++
Sbjct: 14  EDENELGGSGILVPVDISTNELQILCNQLLGSSDDPVPISFFTTEGAEIVDSIR 67


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 495 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 632
           QP CM   + + VV+     PA  Q     + Q +++C+QT+   Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAAVQCVPQCQQQCQQQCVQTQPIQQ 171


>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 540  HVLRWYNQIASYTPAERKTWSQGTSP 463
            H+L   +Q+ S TPA    W+QG SP
Sbjct: 1524 HLLDLCSQLHSQTPAIFAKWAQGASP 1549


>Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 178 LQTCACWVWHK*TANYVCH 122
           LQ CA W+WHK   NY+ +
Sbjct: 187 LQRCA-WLWHKLNENYITY 204


>Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 178 LQTCACWVWHK*TANYVCH 122
           LQ CA W+WHK   NY+ +
Sbjct: 187 LQRCA-WLWHKLNENYITY 204


>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
            protein C24H11.7 protein.
          Length = 1820

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 540  HVLRWYNQIASYTPAERKTWSQGTSP 463
            H+L   +Q+ S TPA    W+QG SP
Sbjct: 1524 HLLDLCSQLHSQTPAIFAKWAQGASP 1549


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 34  KCSNVNRLYKIFKFLNFFCQQINRNFVVLDDTHNL 138
           KC+  NRL + FK   FF +  N N VV+    NL
Sbjct: 294 KCAESNRLLEKFKNHRFFAES-NSNIVVMSLPKNL 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,559,245
Number of Sequences: 27780
Number of extensions: 280253
Number of successful extensions: 853
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)