Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e11
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   4.1  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    26   4.1  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   9.4  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 491 WRRYD*PKMGLQAVCSFLGILLGRCSFAFGIIRHFRFFALGFTFLHYLS 637
           WR+Y      +  +        GR S++ G       ++LG  F HYLS
Sbjct: 184 WRKYSEDSESMSRILFISPEQTGRTSYSVGY--RTDIYSLGVLFFHYLS 230


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 644 SRMKDNEER*TQGQKSENVE*CQRQSCIAQEECQEMNK 531
           S + DNE+R    Q  EN    +   C   +E   +NK
Sbjct: 333 SSIADNEDREVDSQVDENTRVVEEDVCFPMQEESHVNK 370


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 71  HGRPAAV*YKMTVLQSTLMMLNIRLNLKIHLCEY 172
           HG  A + Y   V ++++  L I +NL +H+  Y
Sbjct: 149 HGATAVLVYTQIVGRTSISWLIIEINLLVHVTMY 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,071
Number of Sequences: 5004
Number of extensions: 44480
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)