Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e11
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0645 - 19562886-19564484                                         28   7.4  
06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148...    27   9.7  

>10_08_0645 - 19562886-19564484
          Length = 532

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 492 GDGTTSPKWVSRRFVH 539
           GDG  SPKW S  F H
Sbjct: 186 GDGAPSPKWTSAPFTH 201


>06_01_0191 +
           1478267-1478929,1480579-1480789,1482625-1482925,
           1483217-1483612,1483993-1484070,1484166-1484373
          Length = 618

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 624 RKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAW 523
           R   P A++R+C +        P R PR+   AW
Sbjct: 119 RHCPPPAERRRCLVPAPRGYRAPLRWPRSRDAAW 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,191,547
Number of Sequences: 37544
Number of extensions: 286910
Number of successful extensions: 576
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)