Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e10
         (664 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22PB8 Cluster: Putative uncharacterized protein; n=2; ...    33   4.6  
UniRef50_Q7YYX3 Cluster: Putative uncharacterized protein; n=2; ...    33   8.1  

>UniRef50_Q22PB8 Cluster: Putative uncharacterized protein; n=2;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1375

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +2

Query: 209  NV*IYDMAAI-----FRIPNINLVYIIDMYTHFVFRVIFKNNN*VDVNFCLSAQNVFI 367
            N+ +YD+A +     F +P    +  I+ YT   FR+  +NN   DV F L++    +
Sbjct: 1158 NIDVYDLATLLQQFNFILPEKQFILSIEQYTDTQFRIAIENNYIYDVTFLLNSSGQLV 1215


>UniRef50_Q7YYX3 Cluster: Putative uncharacterized protein; n=2;
           Apicomplexa|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum
          Length = 80

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -1

Query: 607 YLKKTNIVLCISMYEKNNIFYLSLFKHLNYIEF 509
           YLK TN  L I+M+E N  FY  L   +NYI F
Sbjct: 23  YLKYTNTKLNITMFE-NFFFYFFLILQINYISF 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,917,334
Number of Sequences: 1657284
Number of extensions: 9903239
Number of successful extensions: 19530
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19514
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)