Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e10
         (664 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118292-1|AAM48321.1|  262|Drosophila melanogaster GH01164p pro...    32   0.61 
AE014297-1053|AAF54462.1|  262|Drosophila melanogaster CG16904-P...    32   0.61 
AE014297-1062|AAN13447.1|  397|Drosophila melanogaster CG31405-P...    29   7.5  

>AY118292-1|AAM48321.1|  262|Drosophila melanogaster GH01164p
           protein.
          Length = 262

 Score = 32.3 bits (70), Expect = 0.61
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +2

Query: 122 LIFVLIDTRRRIFFLYIYLHSFLMTTLNVNV*IYDMAA-IFRIPNINLVYIIDMYTHF 292
           + FVL   +R+I FL+++ H F++ T ++ +  Y     +F I   N++  I MY ++
Sbjct: 120 IFFVLRKKQRQITFLHVFHHVFMVFTSHMLIRFYGFGGHVFLICMFNVLVHIVMYGYY 177


>AE014297-1053|AAF54462.1|  262|Drosophila melanogaster CG16904-PA
           protein.
          Length = 262

 Score = 32.3 bits (70), Expect = 0.61
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +2

Query: 122 LIFVLIDTRRRIFFLYIYLHSFLMTTLNVNV*IYDMAA-IFRIPNINLVYIIDMYTHF 292
           + FVL   +R+I FL+++ H F++ T ++ +  Y     +F I   N++  I MY ++
Sbjct: 120 IFFVLRKKQRQITFLHVFHHVFMVFTSHMLIRFYGFGGHVFLICMFNVLVHIVMYGYY 177


>AE014297-1062|AAN13447.1|  397|Drosophila melanogaster CG31405-PA
           protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +2

Query: 146 RRRIFFLYIYLHSFLMTTLNVNV*IYDMAAIFRIPNINLVYIIDMYTHF 292
           R R+ F+Y  LH+F + +L +   ++D    F+    + +  ++ +T+F
Sbjct: 53  RYRVLFMYRLLHNFAVISLTLKF-LFDFTDHFKYIESSTLITVNFFTYF 100


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,656,013
Number of Sequences: 53049
Number of extensions: 418429
Number of successful extensions: 744
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2848092300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)