Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e10
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    26   0.37 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    26   0.37 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.4  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 592 NIVLCISMYEKNNIFYLSLFKHLNYIE 512
           N +  IS Y  NN +   L+ ++NYIE
Sbjct: 88  NYISNISNYNNNNNYNKKLYYNINYIE 114


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 592 NIVLCISMYEKNNIFYLSLFKHLNYIE 512
           N +  IS Y  NN +   L+ ++NYIE
Sbjct: 326 NYISNISNYNNNNNYNKKLYYNINYIE 352


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 124 NICFNRYTSTDFFSLHIPSFLFNDNFKCKCLNL*HGRNFSYSEY*LSVY 270
           N+   R+T   FF+ +  S      + C  ++L   R FSY  Y + +Y
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSY--YLIQIY 249


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 124 NICFNRYTSTDFFSLHIPSFLFNDNFKCKCLNL*HGRNFSYSEY*LSVY 270
           N+   R+T   FF+ +  S      + C  ++L   R FSY  Y + +Y
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSY--YLIQIY 249


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 109 NYLYKLYPKIIHLEQI 62
           NY  KLY  II++EQI
Sbjct: 107 NYNKKLYYNIINIEQI 122


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 109 NYLYKLYPKIIHLEQI 62
           NY  KLY  II++EQI
Sbjct: 107 NYNKKLYYNIINIEQI 122


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 110 NSTQLIFVLIDTRRRIFFLYIYLHSFL 190
           N  QL+F   D ++R FF+ ++   FL
Sbjct: 366 NFQQLLFSKYDAKKRNFFITMFDLDFL 392


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 109 NYLYKLYPKIIHLEQI 62
           NY  KLY  II++EQI
Sbjct: 327 NYNKKLYYNIINIEQI 342


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 109 NYLYKLYPKIIHLEQI 62
           NY  KLY  II++EQI
Sbjct: 331 NYNKKLYYNIINIEQI 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,043
Number of Sequences: 438
Number of extensions: 3397
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)