Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e09
         (808 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2YTD2 Cluster: Putative uncharacterized protein; n=3; ...    36   1.2  
UniRef50_Q2W161 Cluster: Putative uncharacterized protein; n=2; ...    33   6.4  

>UniRef50_A2YTD2 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 309

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 92  HTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 205
           H NA  ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 129 HQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 166


>UniRef50_Q2W161 Cluster: Putative uncharacterized protein; n=2;
           Magnetospirillum|Rep: Putative uncharacterized protein -
           Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
          Length = 499

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 13/153 (8%)
 Frame = +2

Query: 362 YYRRKRALLHLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTELARIGNV*NSSALL 541
           ++RR+ A++   +    ++H K  E ++H   KL     LHD F       ++   S +L
Sbjct: 55  HFRREEAVMAAIKYSELEQHKKAHETLAHKA-KL-----LHDKFKAATLEEDLKTCSQVL 108

Query: 542 SAIFTDTDTEHYRHNTAKQ*G---RKIRPNPHLTILLKK*NGK*STVVPTST-SKWEVKH 709
             + TD    H      K  G   +K  P P +  +++  NG  S        ++WE +H
Sbjct: 109 IRVLTDWLVTHILKEDMKYKGSVPKKAPPPPPVAPVVEMFNGMPSKEDEAERKARWEARH 168

Query: 710 RR---------AHLNLKMGSKAPKCPPXPQKWE 781
           +          AHL  ++    P+ PP   K+E
Sbjct: 169 KDIEYELPPNLAHLLKRLDYVVPELPPPAGKFE 201


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 809,611,820
Number of Sequences: 1657284
Number of extensions: 16794548
Number of successful extensions: 44037
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43936
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)