Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e09
         (808 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    28   0.10 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.9  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 667 HRRAHLNLKMGSKAPSCPPQPQNGK--*STEVPTSXSKMGSKAR 792
           H+ ++    +GS A +CPP P++ +   S E P+   K G K R
Sbjct: 80  HQNSYTGYHLGSYAANCPPSPKDDEKCLSLERPSGGGK-GKKMR 122



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 657 GSKAPSCPPQPQN 695
           GS A +CPP P++
Sbjct: 90  GSYAANCPPSPKD 102


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 619 ESASNHTAQKIKREVKHR 672
           E   NHT+ KIKRE + R
Sbjct: 874 ERLENHTSVKIKREAEDR 891


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 440 SILLTSNVYLWLVLAADVRVHA 375
           S L+    ++WLVL++ VR +A
Sbjct: 488 SFLVNDFGFIWLVLSSTVRAYA 509


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,713
Number of Sequences: 336
Number of extensions: 4114
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)